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RNA-protein interaction detection in living cells.
Ramanathan M, Majzoub K, Rao DS, Neela PH, Zarnegar BJ, Mondal S, Roth JG, Gai H, Kovalski JR, Siprashvili Z, Palmer TD, Carette JE, Khavari PA. Ramanathan M, et al. Among authors: khavari pa. Nat Methods. 2018 Mar;15(3):207-212. doi: 10.1038/nmeth.4601. Epub 2018 Feb 5. Nat Methods. 2018. PMID: 29400715 Free PMC article.
Methods to study RNA-protein interactions.
Ramanathan M, Porter DF, Khavari PA. Ramanathan M, et al. Among authors: khavari pa. Nat Methods. 2019 Mar;16(3):225-234. doi: 10.1038/s41592-019-0330-1. Epub 2019 Feb 25. Nat Methods. 2019. PMID: 30804549 Free PMC article. Review.
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.
Meyers JM, Ramanathan M, Shanderson RL, Beck A, Donohue L, Ferguson I, Guo MG, Rao DS, Miao W, Reynolds D, Yang X, Zhao Y, Yang YY, Blish C, Wang Y, Khavari PA. Meyers JM, et al. Among authors: khavari pa. PLoS Pathog. 2021 Oct 1;17(10):e1009412. doi: 10.1371/journal.ppat.1009412. eCollection 2021 Oct. PLoS Pathog. 2021. PMID: 34597346 Free PMC article.
PROBER identifies proteins associated with programmable sequence-specific DNA in living cells.
Mondal S, Ramanathan M, Miao W, Meyers RM, Rao D, Lopez-Pajares V, Siprashvili Z, Reynolds DL, Porter DF, Ferguson I, Neela P, Zhao Y, Meservey LM, Guo M, Yang YY, Li L, Wang Y, Khavari PA. Mondal S, et al. Among authors: khavari pa. Nat Methods. 2022 Aug;19(8):959-968. doi: 10.1038/s41592-022-01552-w. Epub 2022 Aug 4. Nat Methods. 2022. PMID: 35927480 Free PMC article.
Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation.
Miao W, Porter DF, Lopez-Pajares V, Siprashvili Z, Meyers RM, Bai Y, Nguyen DT, Ko LA, Zarnegar BJ, Ferguson ID, Mills MM, Jilly-Rehak CE, Wu CG, Yang YY, Meyers JM, Hong AW, Reynolds DL, Ramanathan M, Tao S, Jiang S, Flynn RA, Wang Y, Nolan GP, Khavari PA. Miao W, et al. Among authors: khavari pa. Cell. 2023 Jan 5;186(1):80-97.e26. doi: 10.1016/j.cell.2022.12.004. Cell. 2023. PMID: 36608661 Free PMC article.
165 results