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Promoter analysis of Mammalian clock controlled genes.
Bozek K, Kiełbasa SM, Kramer A, Herzel H. Bozek K, et al. Among authors: kielbasa sm. Genome Inform. 2007;18:65-74. Genome Inform. 2007. PMID: 18546475
HOMGL-comparing genelists across species and with different accession numbers.
Blüthgen N, Kiełbasa SM, Cajavec B, Herzel H. Blüthgen N, et al. Among authors: kielbasa sm. Bioinformatics. 2004 Jan 1;20(1):125-6. doi: 10.1093/bioinformatics/btg379. Bioinformatics. 2004. PMID: 14693820
Inferring combinatorial regulation of transcription in silico.
Blüthgen N, Kiełbasa SM, Herzel H. Blüthgen N, et al. Among authors: kielbasa sm. Nucleic Acids Res. 2005 Jan 12;33(1):272-9. doi: 10.1093/nar/gki167. Print 2005. Nucleic Acids Res. 2005. PMID: 15647509 Free PMC article.
Measuring similarities between transcription factor binding sites.
Kielbasa SM, Gonze D, Herzel H. Kielbasa SM, et al. BMC Bioinformatics. 2005 Sep 28;6:237. doi: 10.1186/1471-2105-6-237. BMC Bioinformatics. 2005. PMID: 16191190 Free PMC article.
Regulatory elements of marine cyanobacteria.
Kiełbasa SM, Herzel H, Axmann IM. Kiełbasa SM, et al. Genome Inform. 2007;18:1-11. Genome Inform. 2007. PMID: 18546470
A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts.
Blüthgen N, Legewie S, Kielbasa SM, Schramme A, Tchernitsa O, Keil J, Solf A, Vingron M, Schäfer R, Herzel H, Sers C. Blüthgen N, et al. Among authors: kielbasa sm. FEBS J. 2009 Feb;276(4):1024-35. doi: 10.1111/j.1742-4658.2008.06846.x. Epub 2009 Jan 12. FEBS J. 2009. PMID: 19154344
Regulation of clock-controlled genes in mammals.
Bozek K, Relógio A, Kielbasa SM, Heine M, Dame C, Kramer A, Herzel H. Bozek K, et al. Among authors: kielbasa sm. PLoS One. 2009;4(3):e4882. doi: 10.1371/journal.pone.0004882. Epub 2009 Mar 16. PLoS One. 2009. PMID: 19287494 Free PMC article.
Targetfinder.org: a resource for systematic discovery of transcription factor target genes.
Kiełbasa SM, Blüthgen N, Fähling M, Mrowka R. Kiełbasa SM, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W233-8. doi: 10.1093/nar/gkq374. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460454 Free PMC article.
TransFind--predicting transcriptional regulators for gene sets.
Kiełbasa SM, Klein H, Roider HG, Vingron M, Blüthgen N. Kiełbasa SM, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W275-80. doi: 10.1093/nar/gkq438. Epub 2010 May 28. Nucleic Acids Res. 2010. PMID: 20511592 Free PMC article.
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