Kihara D - Search Results

1

Assessment of protein side-chain conformation prediction methods in different residue environments.

Peterson LX, Kang X, Kihara D. Peterson LX, et al. Among authors: kihara d. Proteins. 2014 Sep;82(9):1971-84. doi: 10.1002/prot.24552. Epub 2014 Mar 31. Proteins. 2014. PMID: 24619909 Free PMC article.

2

Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.

Skolnick J, Kihara D. Skolnick J, et al. Among authors: kihara d. Proteins. 2001 Feb 15;42(3):319-31. Proteins. 2001. PMID: 11151004

3

Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.

Kolinski A, Betancourt MR, Kihara D, Rotkiewicz P, Skolnick J. Kolinski A, et al. Among authors: kihara d. Proteins. 2001 Aug 1;44(2):133-49. doi: 10.1002/prot.1080. Proteins. 2001. PMID: 11391776

4

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement.

Skolnick J, Kolinski A, Kihara D, Betancourt M, Rotkiewicz P, Boniecki M. Skolnick J, et al. Among authors: kihara d. Proteins. 2001;Suppl 5:149-56. doi: 10.1002/prot.1172. Proteins. 2001. PMID: 11835492

5

Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.

Zhang Y, Kihara D, Skolnick J. Zhang Y, et al. Among authors: kihara d. Proteins. 2002 Aug 1;48(2):192-201. doi: 10.1002/prot.10141. Proteins. 2002. PMID: 12112688

6

TOUCHSTONEX: protein structure prediction with sparse NMR data.

Li W, Zhang Y, Kihara D, Huang YJ, Zheng D, Montelione GT, Kolinski A, Skolnick J. Li W, et al. Among authors: kihara d. Proteins. 2003 Nov 1;53(2):290-306. doi: 10.1002/prot.10499. Proteins. 2003. PMID: 14517980

7

TOUCHSTONE: a unified approach to protein structure prediction.

Skolnick J, Zhang Y, Arakaki AK, Kolinski A, Boniecki M, Szilágyi A, Kihara D. Skolnick J, et al. Among authors: kihara d. Proteins. 2003;53 Suppl 6:469-79. doi: 10.1002/prot.10551. Proteins. 2003. PMID: 14579335

8

Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_Q.

Kihara D, Skolnick J. Kihara D, et al. Proteins. 2004 May 1;55(2):464-73. doi: 10.1002/prot.20044. Proteins. 2004. PMID: 15048836

9

Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.

Skolnick J, Kihara D, Zhang Y. Skolnick J, et al. Among authors: kihara d. Proteins. 2004 Aug 15;56(3):502-18. doi: 10.1002/prot.20106. Proteins. 2004. PMID: 15229883

10

The effect of long-range interactions on the secondary structure formation of proteins.

Kihara D. Kihara D. Protein Sci. 2005 Aug;14(8):1955-63. doi: 10.1110/ps.051479505. Epub 2005 Jun 29. Protein Sci. 2005. PMID: 15987894 Free PMC article.

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