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Limitations and potentials of current motif discovery algorithms.
Hu J, Li B, Kihara D. Hu J, et al. Nucleic Acids Res. 2005 Sep 2;33(15):4899-913. doi: 10.1093/nar/gki791. Print 2005. Nucleic Acids Res. 2005. PMID: 16284194 Free PMC article.
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
Hu J, Yang YD, Kihara D. Hu J, et al. BMC Bioinformatics. 2006 Jul 13;7:342. doi: 10.1186/1471-2105-7-342. BMC Bioinformatics. 2006. PMID: 16839417 Free PMC article.
Comparative genomics of small RNAs in bacterial genomes.
Luban S, Kihara D. Luban S, et al. OMICS. 2007 Spring;11(1):58-73. doi: 10.1089/omi.2006.0005. OMICS. 2007. PMID: 17411396
Function prediction of uncharacterized proteins.
Hawkins T, Kihara D. Hawkins T, et al. J Bioinform Comput Biol. 2007 Feb;5(1):1-30. doi: 10.1142/s0219720007002503. J Bioinform Comput Biol. 2007. PMID: 17477489 Review.
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