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2,470 results
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The proteomic complexity and rise of the primordial ancestor of diversified life.
Kim KM, Caetano-Anollés G. Kim KM, et al. BMC Evol Biol. 2011 May 25;11:140. doi: 10.1186/1471-2148-11-140. BMC Evol Biol. 2011. PMID: 21612591 Free PMC article.
Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data.
Kim KM, Caetano-Anollés G. Kim KM, et al. Mol Biol Evol. 2010 Jul;27(7):1710-33. doi: 10.1093/molbev/msq106. Epub 2010 Apr 22. Mol Biol Evol. 2010. PMID: 20418223
A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation.
Wang M, Jiang YY, Kim KM, Qu G, Ji HF, Mittenthal JE, Zhang HY, Caetano-Anollés G. Wang M, et al. Among authors: kim km. Mol Biol Evol. 2011 Jan;28(1):567-82. doi: 10.1093/molbev/msq232. Epub 2010 Aug 30. Mol Biol Evol. 2011. PMID: 20805191
Proteome evolution and the metabolic origins of translation and cellular life.
Caetano-Anollés D, Kim KM, Mittenthal JE, Caetano-Anollés G. Caetano-Anollés D, et al. Among authors: kim km. J Mol Evol. 2011 Jan;72(1):14-33. doi: 10.1007/s00239-010-9400-9. Epub 2010 Nov 17. J Mol Evol. 2011. PMID: 21082171
Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome.
Seufferheld MJ, Kim KM, Whitfield J, Valerio A, Caetano-Anollés G. Seufferheld MJ, et al. Among authors: kim km. Biol Direct. 2011 Oct 5;6:50. doi: 10.1186/1745-6150-6-50. Biol Direct. 2011. PMID: 21974828 Free PMC article.
The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.
Caetano-Anollés G, Kim KM, Caetano-Anollés D. Caetano-Anollés G, et al. Among authors: kim km. J Mol Evol. 2012 Feb;74(1-2):1-34. doi: 10.1007/s00239-011-9480-1. Epub 2012 Jan 1. J Mol Evol. 2012. PMID: 22210458
Protein domain structure uncovers the origin of aerobic metabolism and the rise of planetary oxygen.
Kim KM, Qin T, Jiang YY, Chen LL, Xiong M, Caetano-Anollés D, Zhang HY, Caetano-Anollés G. Kim KM, et al. Structure. 2012 Jan 11;20(1):67-76. doi: 10.1016/j.str.2011.11.003. Structure. 2012. PMID: 22244756
The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms.
Kim KM, Caetano-Anollés G. Kim KM, et al. BMC Evol Biol. 2012 Jan 27;12:13. doi: 10.1186/1471-2148-12-13. BMC Evol Biol. 2012. PMID: 22284070 Free PMC article.
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya.
Nasir A, Kim KM, Caetano-Anolles G. Nasir A, et al. Among authors: kim km. BMC Evol Biol. 2012 Aug 24;12:156. doi: 10.1186/1471-2148-12-156. BMC Evol Biol. 2012. PMID: 22920653 Free PMC article.
Viral evolution: Primordial cellular origins and late adaptation to parasitism.
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. Among authors: kim km. Mob Genet Elements. 2012 Sep 1;2(5):247-252. doi: 10.4161/mge.22797. Mob Genet Elements. 2012. PMID: 23550145 Free PMC article.
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