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2,476 results
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A tree of cellular life inferred from a genomic census of molecular functions.
Kim KM, Nasir A, Hwang K, Caetano-Anollés G. Kim KM, et al. J Mol Evol. 2014 Dec;79(5-6):240-62. doi: 10.1007/s00239-014-9637-9. Epub 2014 Aug 17. J Mol Evol. 2014. PMID: 25128982
An approach of orthology detection from homologous sequences under minimum evolution.
Kim KM, Sung S, Caetano-Anollés G, Han JY, Kim H. Kim KM, et al. Among authors: kim h. Nucleic Acids Res. 2008 Oct;36(17):e110. doi: 10.1093/nar/gkn485. Epub 2008 Aug 1. Nucleic Acids Res. 2008. PMID: 18676448 Free PMC article.
Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data.
Kim KM, Caetano-Anollés G. Kim KM, et al. Mol Biol Evol. 2010 Jul;27(7):1710-33. doi: 10.1093/molbev/msq106. Epub 2010 Apr 22. Mol Biol Evol. 2010. PMID: 20418223
A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation.
Wang M, Jiang YY, Kim KM, Qu G, Ji HF, Mittenthal JE, Zhang HY, Caetano-Anollés G. Wang M, et al. Among authors: kim km. Mol Biol Evol. 2011 Jan;28(1):567-82. doi: 10.1093/molbev/msq232. Epub 2010 Aug 30. Mol Biol Evol. 2011. PMID: 20805191
Proteome evolution and the metabolic origins of translation and cellular life.
Caetano-Anollés D, Kim KM, Mittenthal JE, Caetano-Anollés G. Caetano-Anollés D, et al. Among authors: kim km. J Mol Evol. 2011 Jan;72(1):14-33. doi: 10.1007/s00239-010-9400-9. Epub 2010 Nov 17. J Mol Evol. 2011. PMID: 21082171
The proteomic complexity and rise of the primordial ancestor of diversified life.
Kim KM, Caetano-Anollés G. Kim KM, et al. BMC Evol Biol. 2011 May 25;11:140. doi: 10.1186/1471-2148-11-140. BMC Evol Biol. 2011. PMID: 21612591 Free PMC article.
The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.
Caetano-Anollés G, Kim KM, Caetano-Anollés D. Caetano-Anollés G, et al. Among authors: kim km. J Mol Evol. 2012 Feb;74(1-2):1-34. doi: 10.1007/s00239-011-9480-1. Epub 2012 Jan 1. J Mol Evol. 2012. PMID: 22210458
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya.
Nasir A, Kim KM, Caetano-Anolles G. Nasir A, et al. Among authors: kim km. BMC Evol Biol. 2012 Aug 24;12:156. doi: 10.1186/1471-2148-12-156. BMC Evol Biol. 2012. PMID: 22920653 Free PMC article.
The importance of using realistic evolutionary models for retrodicting proteomes.
Kim KM, Nasir A, Caetano-Anollés G. Kim KM, et al. Biochimie. 2014 Apr;99:129-37. doi: 10.1016/j.biochi.2013.11.019. Epub 2013 Dec 4. Biochimie. 2014. PMID: 24316279
Global patterns of protein domain gain and loss in superkingdoms.
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. Among authors: kim km. PLoS Comput Biol. 2014 Jan 30;10(1):e1003452. doi: 10.1371/journal.pcbi.1003452. eCollection 2014 Jan. PLoS Comput Biol. 2014. PMID: 24499935 Free PMC article.
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