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Genome sequencing and analysis of Aspergillus oryzae.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H. Machida M, et al. Nature. 2005 Dec 22;438(7071):1157-61. doi: 10.1038/nature04300. Nature. 2005. PMID: 16372010
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells.
Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC, Siomi H. Kawamura Y, et al. Nature. 2008 Jun 5;453(7196):793-7. doi: 10.1038/nature06938. Epub 2008 May 7. Nature. 2008. PMID: 18463636
Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus.
Sasaki YT, Sano M, Kin T, Asai K, Hirose T. Sasaki YT, et al. Biochem Biophys Res Commun. 2007 Jun 8;357(3):724-30. doi: 10.1016/j.bbrc.2007.03.200. Epub 2007 Apr 9. Biochem Biophys Res Commun. 2007. PMID: 17445766
Mining frequent stem patterns from unaligned RNA sequences.
Hamada M, Tsuda K, Kudo T, Kin T, Asai K. Hamada M, et al. Bioinformatics. 2006 Oct 15;22(20):2480-7. doi: 10.1093/bioinformatics/btl431. Epub 2006 Aug 14. Bioinformatics. 2006. PMID: 16908501
Marginalized kernels for biological sequences.
Tsuda K, Kin T, Asai K. Tsuda K, et al. Bioinformatics. 2002;18 Suppl 1:S268-75. doi: 10.1093/bioinformatics/18.suppl_1.s268. Bioinformatics. 2002. PMID: 12169556
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