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Three periods of regulatory innovation during vertebrate evolution.
Lowe CB, Kellis M, Siepel A, Raney BJ, Clamp M, Salama SR, Kingsley DM, Lindblad-Toh K, Haussler D. Lowe CB, et al. Among authors: kingsley dm. Science. 2011 Aug 19;333(6045):1019-24. doi: 10.1126/science.1202702. Science. 2011. PMID: 21852499 Free PMC article.
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.
Chan YF, Marks ME, Jones FC, Villarreal G Jr, Shapiro MD, Brady SD, Southwick AM, Absher DM, Grimwood J, Schmutz J, Myers RM, Petrov D, Jónsson B, Schluter D, Bell MA, Kingsley DM. Chan YF, et al. Among authors: kingsley dm. Science. 2010 Jan 15;327(5963):302-5. doi: 10.1126/science.1182213. Epub 2009 Dec 10. Science. 2010. PMID: 20007865 Free PMC article.
Human-specific loss of regulatory DNA and the evolution of human-specific traits.
McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, Guenther C, Indjeian VB, Lim X, Menke DB, Schaar BT, Wenger AM, Bejerano G, Kingsley DM. McLean CY, et al. Among authors: kingsley dm. Nature. 2011 Mar 10;471(7337):216-9. doi: 10.1038/nature09774. Nature. 2011. PMID: 21390129 Free PMC article.
The genomic basis of adaptive evolution in threespine sticklebacks.
Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, Myers RM, Miller CT, Summers BR, Knecht AK, Brady SD, Zhang H, Pollen AA, Howes T, Amemiya C; Broad Institute Genome Sequencing Platform & Whole Genome Assembly Team; Baldwin J, Bloom T, Jaffe DB, Nicol R, Wilkinson J, Lander ES, Di Palma F, Lindblad-Toh K, Kingsley DM. Jones FC, et al. Among authors: kingsley dm. Nature. 2012 Apr 4;484(7392):55-61. doi: 10.1038/nature10944. Nature. 2012. PMID: 22481358 Free PMC article.
Detecting differential copy number variation between groups of samples.
Lowe CB, Sanchez-Luege N, Howes TR, Brady SD, Daugherty RR, Jones FC, Bell MA, Kingsley DM. Lowe CB, et al. Among authors: kingsley dm. Genome Res. 2018 Feb;28(2):256-265. doi: 10.1101/gr.206938.116. Epub 2017 Dec 11. Genome Res. 2018. PMID: 29229672 Free PMC article.
DNA fragility in the parallel evolution of pelvic reduction in stickleback fish.
Xie KT, Wang G, Thompson AC, Wucherpfennig JI, Reimchen TE, MacColl ADC, Schluter D, Bell MA, Vasquez KM, Kingsley DM. Xie KT, et al. Among authors: kingsley dm. Science. 2019 Jan 4;363(6422):81-84. doi: 10.1126/science.aan1425. Epub 2019 Jan 3. Science. 2019. PMID: 30606845 Free PMC article.
Evolution of stickleback spines through independent cis-regulatory changes at HOXDB.
Wucherpfennig JI, Howes TR, Au JN, Au EH, Roberts Kingman GA, Brady SD, Herbert AL, Reimchen TE, Bell MA, Lowe CB, Dalziel AC, Kingsley DM. Wucherpfennig JI, et al. Among authors: kingsley dm. Nat Ecol Evol. 2022 Oct;6(10):1537-1552. doi: 10.1038/s41559-022-01855-3. Epub 2022 Sep 1. Nat Ecol Evol. 2022. PMID: 36050398 Free PMC article.
141 results