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EBIMed--text crunching to gather facts for proteins from Medline.
Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Riethoven M, Stoehr P. Rebholz-Schuhmann D, et al. Among authors: Kirsch H. Bioinformatics. 2007 Jan 15;23(2):e237-44. doi: 10.1093/bioinformatics/btl302. Bioinformatics. 2007. PMID: 17237098
Resolving abbreviations to their senses in Medline.
Gaudan S, Kirsch H, Rebholz-Schuhmann D. Gaudan S, et al. Among authors: Kirsch H. Bioinformatics. 2005 Sep 15;21(18):3658-64. doi: 10.1093/bioinformatics/bti586. Epub 2005 Jul 21. Bioinformatics. 2005. PMID: 16037121
Protein annotation by EBIMed.
Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Rynbeek M, Stoehr P. Rebholz-Schuhmann D, et al. Among authors: Kirsch H. Nat Biotechnol. 2006 Aug;24(8):902-3. doi: 10.1038/nbt0806-902. Nat Biotechnol. 2006. PMID: 16900125 No abstract available.
PCorral--interactive mining of protein interactions from MEDLINE.
Li C, Jimeno-Yepes A, Arregui M, Kirsch H, Rebholz-Schuhmann D. Li C, et al. Among authors: Kirsch H. Database (Oxford). 2013 May 2;2013:bat030. doi: 10.1093/database/bat030. Print 2013. Database (Oxford). 2013. PMID: 23640984 Free PMC article.
Text processing through Web services: calling Whatizit.
Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A. Rebholz-Schuhmann D, et al. Among authors: Kirsch H. Bioinformatics. 2008 Jan 15;24(2):296-8. doi: 10.1093/bioinformatics/btm557. Epub 2007 Nov 15. Bioinformatics. 2008. PMID: 18006544
Facts from text--is text mining ready to deliver?
Rebholz-Schuhmann D, Kirsch H, Couto F. Rebholz-Schuhmann D, et al. Among authors: Kirsch H. PLoS Biol. 2005 Feb;3(2):e65. doi: 10.1371/journal.pbio.0030065. PLoS Biol. 2005. PMID: 15719064 Free PMC article.
Automatic extraction of mutations from Medline and cross-validation with OMIM.
Rebholz-Schuhmann D, Marcel S, Albert S, Tolle R, Casari G, Kirsch H. Rebholz-Schuhmann D, et al. Among authors: Kirsch H. Nucleic Acids Res. 2004 Jan 2;32(1):135-42. doi: 10.1093/nar/gkh162. Print 2004. Nucleic Acids Res. 2004. PMID: 14704350 Free PMC article.
Computer-assisted generation of a protein-interaction database for nuclear receptors.
Albert S, Gaudan S, Knigge H, Raetsch A, Delgado A, Huhse B, Kirsch H, Albers M, Rebholz-Schuhmann D, Koegl M. Albert S, et al. Among authors: Kirsch H. Mol Endocrinol. 2003 Aug;17(8):1555-67. doi: 10.1210/me.2002-0424. Epub 2003 May 8. Mol Endocrinol. 2003. PMID: 12738764
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