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Computational systems biology.
Kitano H. Kitano H. Nature. 2002 Nov 14;420(6912):206-10. doi: 10.1038/nature01254. Nature. 2002. PMID: 12432404 Review.
Multi-spectral fluorescent reporter influenza viruses (Color-flu) as powerful tools for in vivo studies.
Fukuyama S, Katsura H, Zhao D, Ozawa M, Ando T, Shoemaker JE, Ishikawa I, Yamada S, Neumann G, Watanabe S, Kitano H, Kawaoka Y. Fukuyama S, et al. Among authors: kitano h. Nat Commun. 2015 Mar 25;6:6600. doi: 10.1038/ncomms7600. Nat Commun. 2015. PMID: 25807527 Free PMC article.
Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Among authors: kitano h. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
Polouliakh N, Horton P, Shibanai K, Takata K, Ludwig V, Ghosh S, Kitano H. Polouliakh N, et al. Among authors: kitano h. BMC Genomics. 2018 Sep 27;19(1):715. doi: 10.1186/s12864-018-5101-3. BMC Genomics. 2018. PMID: 30261835 Free PMC article.
Visualization of omics data for systems biology.
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC. Gehlenborg N, et al. Among authors: kitano h. Nat Methods. 2010 Mar;7(3 Suppl):S56-68. doi: 10.1038/nmeth.1436. Nat Methods. 2010. PMID: 20195258 Review.
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration.
Sauro HM, Hucka M, Finney A, Wellock C, Bolouri H, Doyle J, Kitano H. Sauro HM, et al. Among authors: kitano h. OMICS. 2003 Winter;7(4):355-72. doi: 10.1089/153623103322637670. OMICS. 2003. PMID: 14683609
Software for systems biology: from tools to integrated platforms.
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Ghosh S, et al. Among authors: kitano h. Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Nat Rev Genet. 2011. PMID: 22048662 Review.
Large-scale analysis of network bistability for human cancers.
Shiraishi T, Matsuyama S, Kitano H. Shiraishi T, et al. Among authors: kitano h. PLoS Comput Biol. 2010 Jul 8;6(7):e1000851. doi: 10.1371/journal.pcbi.1000851. PLoS Comput Biol. 2010. PMID: 20628618 Free PMC article.
PathText: a text mining integrator for biological pathway visualizations.
Kemper B, Matsuzaki T, Matsuoka Y, Tsuruoka Y, Kitano H, Ananiadou S, Tsujii J. Kemper B, et al. Among authors: kitano h. Bioinformatics. 2010 Jun 15;26(12):i374-81. doi: 10.1093/bioinformatics/btq221. Bioinformatics. 2010. PMID: 20529930 Free PMC article.
Violations of robustness trade-offs.
Kitano H. Kitano H. Mol Syst Biol. 2010 Jun 22;6:384. doi: 10.1038/msb.2010.40. Mol Syst Biol. 2010. PMID: 20571533 Free PMC article.
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