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673 results
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Harnessing diversity towards the reconstructing of large scale gene regulatory networks.
Hase T, Ghosh S, Yamanaka R, Kitano H. Hase T, et al. Among authors: kitano h. PLoS Comput Biol. 2013;9(11):e1003361. doi: 10.1371/journal.pcbi.1003361. Epub 2013 Nov 21. PLoS Comput Biol. 2013. PMID: 24278007 Free PMC article.
DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants.
Kyoda K, Baba K, Onami S, Kitano H. Kyoda K, et al. Among authors: kitano h. Bioinformatics. 2004 Nov 1;20(16):2662-75. doi: 10.1093/bioinformatics/bth306. Epub 2004 May 27. Bioinformatics. 2004. PMID: 15166016
Using process diagrams for the graphical representation of biological networks.
Kitano H, Funahashi A, Matsuoka Y, Oda K. Kitano H, et al. Nat Biotechnol. 2005 Aug;23(8):961-6. doi: 10.1038/nbt1111. Nat Biotechnol. 2005. PMID: 16082367
In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae.
Moriya H, Shimizu-Yoshida Y, Kitano H. Moriya H, et al. Among authors: kitano h. PLoS Genet. 2006 Jul;2(7):e111. doi: 10.1371/journal.pgen.0020111. Epub 2006 Jun 5. PLoS Genet. 2006. PMID: 16839182 Free PMC article.
Genome-wide prediction of genetic interactions in a metazoan.
Onami S, Kitano H. Onami S, et al. Among authors: kitano h. Bioessays. 2006 Nov;28(11):1087-90. doi: 10.1002/bies.20490. Bioessays. 2006. PMID: 17041895
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y. FANTOM Consortium, et al. Among authors: kitano h. Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19. Nat Genet. 2009. PMID: 19377474 Free PMC article.
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Matsuoka Y, Ghosh S, Kitano H. Matsuoka Y, et al. Among authors: kitano h. J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S393-404. doi: 10.1098/rsif.2009.0046.focus. Epub 2009 Jun 3. J R Soc Interface. 2009. PMID: 19493898 Free PMC article. Review.
Structure of protein interaction networks and their implications on drug design.
Hase T, Tanaka H, Suzuki Y, Nakagawa S, Kitano H. Hase T, et al. Among authors: kitano h. PLoS Comput Biol. 2009 Oct;5(10):e1000550. doi: 10.1371/journal.pcbi.1000550. Epub 2009 Oct 30. PLoS Comput Biol. 2009. PMID: 19876376 Free PMC article.
Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Among authors: kitano h. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
CONTACT: kitano@sbi.jp...
CONTACT: kitano@sbi.jp...
Violations of robustness trade-offs.
Kitano H. Kitano H. Mol Syst Biol. 2010 Jun 22;6:384. doi: 10.1038/msb.2010.40. Mol Syst Biol. 2010. PMID: 20571533 Free PMC article.
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