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Complete characterization of posttranslational modification sites in the bovine milk protein PP3 by tandem mass spectrometry with electron capture dissociation as the last stage.
Kjeldsen F, Haselmann KF, Budnik BA, Sørensen ES, Zubarev RA. Kjeldsen F, et al. Anal Chem. 2003 May 15;75(10):2355-61. doi: 10.1021/ac026295b. Anal Chem. 2003. PMID: 12918977
N-terminal sequence tagging using reliably determined b2 ions: a useful approach to deconvolute tandem mass spectra of co-fragmented peptides in proteomics.
Kryuchkov F, Verano-Braga T, Kjeldsen F. Kryuchkov F, et al. Among authors: kjeldsen f. J Proteomics. 2014 May 30;103:254-60. doi: 10.1016/j.jprot.2014.03.039. Epub 2014 Apr 12. J Proteomics. 2014. PMID: 24726481
Peptide de novo sequencing of mixture tandem mass spectra.
Gorshkov V, Hotta SY, Verano-Braga T, Kjeldsen F. Gorshkov V, et al. Among authors: kjeldsen f. Proteomics. 2016 Sep;16(18):2470-9. doi: 10.1002/pmic.201500549. Epub 2016 Aug 5. Proteomics. 2016. PMID: 27329701 Free PMC article.
Assessment of protein extraction and digestion efficiency of well-established shotgun protocols for heart proteomics.
Rodrigues-Ribeiro L, Melo-Braga MN, Kjeldsen F, Gómez-Mendoza DP, Verano-Braga T. Rodrigues-Ribeiro L, et al. Among authors: kjeldsen f. Anal Biochem. 2019 Aug 1;578:51-59. doi: 10.1016/j.ab.2019.05.006. Epub 2019 May 11. Anal Biochem. 2019. PMID: 31085165
Analysis of histidine phosphorylation using tandem MS and ion-electron reactions.
Kleinnijenhuis AJ, Kjeldsen F, Kallipolitis B, Haselmann KF, Jensen ON. Kleinnijenhuis AJ, et al. Among authors: kjeldsen f. Anal Chem. 2007 Oct 1;79(19):7450-6. doi: 10.1021/ac0707838. Epub 2007 Sep 7. Anal Chem. 2007. PMID: 17822303
SuperQuant: A Data Processing Approach to Increase Quantitative Proteome Coverage.
Gorshkov V, Verano-Braga T, Kjeldsen F. Gorshkov V, et al. Among authors: kjeldsen f. Anal Chem. 2015 Jun 16;87(12):6319-27. doi: 10.1021/acs.analchem.5b01166. Epub 2015 Jun 3. Anal Chem. 2015. PMID: 25978296
Charge inversion of phospholipids by dimetal complexes for positive ion-mode electrospray ionization mass spectrometry analysis.
Svane S, Gorshkov V, Kjeldsen F. Svane S, et al. Among authors: kjeldsen f. Anal Chem. 2015 Sep 1;87(17):8732-9. doi: 10.1021/acs.analchem.5b01536. Epub 2015 Aug 10. Anal Chem. 2015. PMID: 26189465
Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.
Kryuchkov F, Verano-Braga T, Hansen TA, Sprenger RR, Kjeldsen F. Kryuchkov F, et al. Among authors: kjeldsen f. J Proteome Res. 2013 Jul 5;12(7):3362-71. doi: 10.1021/pr400210m. Epub 2013 Jun 19. J Proteome Res. 2013. PMID: 23725413
Automated and high confidence protein phosphorylation site localization using complementary collision-activated dissociation and electron transfer dissociation tandem mass spectrometry.
Hansen TA, Sylvester M, Jensen ON, Kjeldsen F. Hansen TA, et al. Among authors: kjeldsen f. Anal Chem. 2012 Nov 20;84(22):9694-9. doi: 10.1021/ac302364r. Epub 2012 Oct 30. Anal Chem. 2012. PMID: 23061748
Reduction in database search space by utilization of amino acid composition information from electron transfer dissociation and higher-energy collisional dissociation mass spectra.
Hansen TA, Kryuchkov F, Kjeldsen F. Hansen TA, et al. Among authors: kjeldsen f. Anal Chem. 2012 Aug 7;84(15):6638-45. doi: 10.1021/ac3010007. Epub 2012 Jul 9. Anal Chem. 2012. PMID: 22799558
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