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53 results
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Direct study of DNA-protein interactions in repressed and active chromatin in living cells.
Kladde MP, Xu M, Simpson RT. Kladde MP, et al. EMBO J. 1996 Nov 15;15(22):6290-300. EMBO J. 1996. PMID: 8947052 Free PMC article.
Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements.
Dhasarathy A, Kladde MP. Dhasarathy A, et al. Among authors: kladde mp. Mol Cell Biol. 2005 Apr;25(7):2698-707. doi: 10.1128/MCB.25.7.2698-2707.2005. Mol Cell Biol. 2005. PMID: 15767675 Free PMC article.
Coupling phosphate homeostasis to cell cycle-specific transcription: mitotic activation of Saccharomyces cerevisiae PHO5 by Mcm1 and Forkhead proteins.
Pondugula S, Neef DW, Voth WP, Darst RP, Dhasarathy A, Reynolds MM, Takahata S, Stillman DJ, Kladde MP. Pondugula S, et al. Among authors: kladde mp. Mol Cell Biol. 2009 Sep;29(18):4891-905. doi: 10.1128/MCB.00222-09. Epub 2009 Jul 13. Mol Cell Biol. 2009. PMID: 19596791 Free PMC article.
Single-molecule and population probing of chromatin structure using DNA methyltransferases.
Kilgore JA, Hoose SA, Gustafson TL, Porter W, Kladde MP. Kilgore JA, et al. Among authors: kladde mp. Methods. 2007 Mar;41(3):320-32. doi: 10.1016/j.ymeth.2006.08.008. Methods. 2007. PMID: 17309843 Free PMC article.
DNA methyltransferase probing of DNA-protein interactions.
Hoose SA, Kladde MP. Hoose SA, et al. Among authors: kladde mp. Methods Mol Biol. 2006;338:225-44. doi: 10.1385/1-59745-097-9:225. Methods Mol Biol. 2006. PMID: 16888362
Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters.
Jessen WJ, Hoose SA, Kilgore JA, Kladde MP. Jessen WJ, et al. Among authors: kladde mp. Nat Struct Mol Biol. 2006 Mar;13(3):256-63. doi: 10.1038/nsmb1062. Epub 2006 Feb 19. Nat Struct Mol Biol. 2006. PMID: 16491089
Mapping chromatin structure in vivo using DNA methyltransferases.
Jessen WJ, Dhasarathy A, Hoose SA, Carvin CD, Risinger AL, Kladde MP. Jessen WJ, et al. Among authors: kladde mp. Methods. 2004 May;33(1):68-80. doi: 10.1016/j.ymeth.2003.10.025. Methods. 2004. PMID: 15039089
Site-selective in vivo targeting of cytosine-5 DNA methylation by zinc-finger proteins.
Carvin CD, Parr RD, Kladde MP. Carvin CD, et al. Among authors: kladde mp. Nucleic Acids Res. 2003 Nov 15;31(22):6493-501. doi: 10.1093/nar/gkg853. Nucleic Acids Res. 2003. PMID: 14602907 Free PMC article.
Targeted cytosine methylation for in vivo detection of protein-DNA interactions.
Carvin CD, Dhasarathy A, Friesenhahn LB, Jessen WJ, Kladde MP. Carvin CD, et al. Among authors: kladde mp. Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7743-8. doi: 10.1073/pnas.1332672100. Epub 2003 Jun 13. Proc Natl Acad Sci U S A. 2003. PMID: 12808133 Free PMC article.
High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation.
Stees JR, Hossain MA, Sunose T, Kudo Y, Pardo CE, Nabilsi NH, Darst RP, Poudyal R, Igarashi K, Huang S, Kladde MP, Bungert J. Stees JR, et al. Among authors: kladde mp. Mol Cell Biol. 2015 Oct 26;36(2):238-50. doi: 10.1128/MCB.00723-15. Print 2016 Jan 15. Mol Cell Biol. 2015. PMID: 26503787 Free PMC article.
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