Klein-Seetharaman J - Search Results

1

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.

2

Random forest similarity for protein-protein interaction prediction from multiple sources.

Qi Y, Klein-Seetharaman J, Bar-Joseph Z. Qi Y, et al. Pac Symp Biocomput. 2005:531-42. Pac Symp Biocomput. 2005. PMID: 15759657 Free article.

3

Evaluation of different biological data and computational classification methods for use in protein interaction prediction.

Qi Y, Bar-Joseph Z, Klein-Seetharaman J. Qi Y, et al. Proteins. 2006 May 15;63(3):490-500. doi: 10.1002/prot.20865. Proteins. 2006. PMID: 16450363 Free PMC article.

4

A mixture of feature experts approach for protein-protein interaction prediction.

Qi Y, Klein-Seetharaman J, Bar-Joseph Z. Qi Y, et al. BMC Bioinformatics. 2007;8 Suppl 10(Suppl 10):S6. doi: 10.1186/1471-2105-8-S10-S6. BMC Bioinformatics. 2007. PMID: 18269700 Free PMC article.

5

Protein complex identification by supervised graph local clustering.

Qi Y, Balem F, Faloutsos C, Klein-Seetharaman J, Bar-Joseph Z. Qi Y, et al. Bioinformatics. 2008 Jul 1;24(13):i250-8. doi: 10.1093/bioinformatics/btn164. Bioinformatics. 2008. PMID: 18586722 Free PMC article.

6

Prediction of interactions between HIV-1 and human proteins by information integration.

Tastan O, Qi Y, Carbonell JG, Klein-Seetharaman J. Tastan O, et al. Pac Symp Biocomput. 2009:516-27. Pac Symp Biocomput. 2009. PMID: 19209727 Free PMC article.

7

Systematic prediction of human membrane receptor interactions.

Qi Y, Dhiman HK, Bhola N, Budyak I, Kar S, Man D, Dutta A, Tirupula K, Carr BI, Grandis J, Bar-Joseph Z, Klein-Seetharaman J. Qi Y, et al. Proteomics. 2009 Dec;9(23):5243-55. doi: 10.1002/pmic.200900259. Proteomics. 2009. PMID: 19798668 Free PMC article.

8

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.

Qi Y, Tastan O, Carbonell JG, Klein-Seetharaman J, Weston J. Qi Y, et al. Bioinformatics. 2010 Sep 15;26(18):i645-52. doi: 10.1093/bioinformatics/btq394. Bioinformatics. 2010. PMID: 20823334 Free PMC article.

9

Discovering pathways by orienting edges in protein interaction networks.

Gitter A, Klein-Seetharaman J, Gupta A, Bar-Joseph Z. Gitter A, et al. Nucleic Acids Res. 2011 Mar;39(4):e22. doi: 10.1093/nar/gkq1207. Epub 2010 Nov 24. Nucleic Acids Res. 2011. PMID: 21109539 Free PMC article.

10

Determining confidence of predicted interactions between HIV-1 and human proteins using conformal method.

Nouretdinov I, Gammerman A, Qi Y, Klein-Seetharaman J. Nouretdinov I, et al. Pac Symp Biocomput. 2012:311-22. Pac Symp Biocomput. 2012. PMID: 22174286 Free PMC article.

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