Klingenhoff A - Search Results

1

Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach.

Scherf M, Klingenhoff A, Werner T. Scherf M, et al. Among authors: klingenhoff a. J Mol Biol. 2000 Mar 31;297(3):599-606. doi: 10.1006/jmbi.2000.3589. J Mol Biol. 2000. PMID: 10731414

2

First pass annotation of promoters on human chromosome 22.

Scherf M, Klingenhoff A, Frech K, Quandt K, Schneider R, Grote K, Frisch M, Gailus-Durner V, Seidel A, Brack-Werner R, Werner T. Scherf M, et al. Among authors: klingenhoff a. Genome Res. 2001 Mar;11(3):333-40. doi: 10.1101/gr.154601. Genome Res. 2001. PMID: 11230158 Free PMC article.

3

In silico prediction of scaffold/matrix attachment regions in large genomic sequences.

Frisch M, Frech K, Klingenhoff A, Cartharius K, Liebich I, Werner T. Frisch M, et al. Among authors: klingenhoff a. Genome Res. 2002 Feb;12(2):349-54. doi: 10.1101/gr.206602. Genome Res. 2002. PMID: 11827955 Free PMC article.

4

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.

Klingenhoff A, Frech K, Quandt K, Werner T. Klingenhoff A, et al. Bioinformatics. 1999 Mar;15(3):180-6. doi: 10.1093/bioinformatics/15.3.180. Bioinformatics. 1999. PMID: 10222404

5

Regulatory modules shared within gene classes as well as across gene classes can be detected by the same in silico approach.

Klingenhoff A, Frech K, Werner T. Klingenhoff A, et al. In Silico Biol. 2002;2(1):S17-26. In Silico Biol. 2002. PMID: 11808874

6

Linking disease-associated genes to regulatory networks via promoter organization.

Döhr S, Klingenhoff A, Maier H, Hrabé de Angelis M, Werner T, Schneider R. Döhr S, et al. Among authors: klingenhoff a. Nucleic Acids Res. 2005 Feb 8;33(3):864-72. doi: 10.1093/nar/gki230. Print 2005. Nucleic Acids Res. 2005. PMID: 15701758 Free PMC article.

7

Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.

Hestand MS, Klingenhoff A, Scherf M, Ariyurek Y, Ramos Y, van Workum W, Suzuki M, Werner T, van Ommen GJ, den Dunnen JT, Harbers M, 't Hoen PA. Hestand MS, et al. Among authors: klingenhoff a. Nucleic Acids Res. 2010 Sep;38(16):e165. doi: 10.1093/nar/gkq602. Epub 2010 Jul 7. Nucleic Acids Res. 2010. PMID: 20615900 Free PMC article.

8

MatInspector and beyond: promoter analysis based on transcription factor binding sites.

Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T. Cartharius K, et al. Among authors: klingenhoff a. Bioinformatics. 2005 Jul 1;21(13):2933-42. doi: 10.1093/bioinformatics/bti473. Epub 2005 Apr 28. Bioinformatics. 2005. PMID: 15860560

9

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML. Sultan M, et al. Among authors: klingenhoff a. Science. 2008 Aug 15;321(5891):956-60. doi: 10.1126/science.1160342. Epub 2008 Jul 3. Science. 2008. PMID: 18599741

10

Comparative promoter analysis allows de novo identification of specialized cell junction-associated proteins.

Cohen CD, Klingenhoff A, Boucherot A, Nitsche A, Henger A, Brunner B, Schmid H, Merkle M, Saleem MA, Koller KP, Werner T, Gröne HJ, Nelson PJ, Kretzler M. Cohen CD, et al. Among authors: klingenhoff a. Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5682-7. doi: 10.1073/pnas.0511257103. Epub 2006 Mar 31. Proc Natl Acad Sci U S A. 2006. PMID: 16581909 Free PMC article.

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