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High-fat diet determines the composition of the murine gut microbiome independently of obesity.
Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen YY, Knight R, Ahima RS, Bushman F, Wu GD. Hildebrandt MA, et al. Among authors: Knight R. Gastroenterology. 2009 Nov;137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042. Epub 2009 Aug 23. Gastroenterology. 2009. PMID: 19706296 Free PMC article.
Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice.
Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, Pan C, Civelek M, Rau CD, Bennett BJ, Mehrabian M, Ursell LK, He A, Castellani LW, Zinker B, Kirby M, Drake TA, Drevon CA, Knight R, Gargalovic P, Kirchgessner T, Eskin E, Lusis AJ. Parks BW, et al. Among authors: Knight R. Cell Metab. 2013 Jan 8;17(1):141-52. doi: 10.1016/j.cmet.2012.12.007. Cell Metab. 2013. PMID: 23312289 Free PMC article.
Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice.
Kashyap PC, Marcobal A, Ursell LK, Larauche M, Duboc H, Earle KA, Sonnenburg ED, Ferreyra JA, Higginbottom SK, Million M, Tache Y, Pasricha PJ, Knight R, Farrugia G, Sonnenburg JL. Kashyap PC, et al. Among authors: Knight R. Gastroenterology. 2013 May;144(5):967-77. doi: 10.1053/j.gastro.2013.01.047. Epub 2013 Feb 1. Gastroenterology. 2013. PMID: 23380084 Free PMC article.
Responses of gut microbiota to diet composition and weight loss in lean and obese mice.
Ravussin Y, Koren O, Spor A, LeDuc C, Gutman R, Stombaugh J, Knight R, Ley RE, Leibel RL. Ravussin Y, et al. Among authors: Knight R. Obesity (Silver Spring). 2012 Apr;20(4):738-47. doi: 10.1038/oby.2011.111. Epub 2011 May 19. Obesity (Silver Spring). 2012. PMID: 21593810 Free PMC article.
Succession of microbial consortia in the developing infant gut microbiome.
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE. Koenig JE, et al. Among authors: Knight R. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4578-85. doi: 10.1073/pnas.1000081107. Epub 2010 Jul 28. Proc Natl Acad Sci U S A. 2011. PMID: 20668239 Free PMC article.
Linking long-term dietary patterns with gut microbial enterotypes.
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD. Wu GD, et al. Among authors: Knight R. Science. 2011 Oct 7;334(6052):105-8. doi: 10.1126/science.1208344. Epub 2011 Sep 1. Science. 2011. PMID: 21885731 Free PMC article. Clinical Trial.
Gut microbiota from twins discordant for obesity modulate metabolism in mice.
Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI. Ridaura VK, et al. Among authors: Knight R. Science. 2013 Sep 6;341(6150):1241214. doi: 10.1126/science.1241214. Science. 2013. PMID: 24009397 Free PMC article.
Human gut microbiome viewed across age and geography.
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI. Yatsunenko T, et al. Among authors: Knight R. Nature. 2012 May 9;486(7402):222-7. doi: 10.1038/nature11053. Nature. 2012. PMID: 22699611 Free PMC article.
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