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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.
Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG. Rideout JR, et al. Among authors: knight r. PeerJ. 2014 Aug 21;2:e545. doi: 10.7717/peerj.545. eCollection 2014. PeerJ. 2014. PMID: 25177538 Free PMC article.
Individual diet has sex-dependent effects on vertebrate gut microbiota.
Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R. Bolnick DI, et al. Among authors: knight r. Nat Commun. 2014 Jul 29;5:4500. doi: 10.1038/ncomms5500. Nat Commun. 2014. PMID: 25072318 Free PMC article.
Moving pictures of the human microbiome.
Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Caporaso JG, et al. Among authors: knight r. Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50. Genome Biol. 2011. PMID: 21624126 Free PMC article.
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