Knight R - Search Results

1

The Western English Channel contains a persistent microbial seed bank.

Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. Caporaso JG, et al. Among authors: knight r. ISME J. 2012 Jun;6(6):1089-93. doi: 10.1038/ismej.2011.162. Epub 2011 Nov 10. ISME J. 2012. PMID: 22071345 Free PMC article.

2

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG. Rideout JR, et al. Among authors: knight r. PeerJ. 2014 Aug 21;2:e545. doi: 10.7717/peerj.545. eCollection 2014. PeerJ. 2014. PMID: 25177538 Free PMC article.

3

Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents.

Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Estrada I, Gao Z, Clemente JC, Costello EK, Knight R. Blaser MJ, et al. Among authors: knight r. ISME J. 2013 Jan;7(1):85-95. doi: 10.1038/ismej.2012.81. Epub 2012 Aug 16. ISME J. 2013. PMID: 22895161 Free PMC article.

4

Individual diet has sex-dependent effects on vertebrate gut microbiota.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R. Bolnick DI, et al. Among authors: knight r. Nat Commun. 2014 Jul 29;5:4500. doi: 10.1038/ncomms5500. Nat Commun. 2014. PMID: 25072318 Free PMC article.

5

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Caporaso JG, et al. Among authors: knight r. Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50. Genome Biol. 2011. PMID: 21624126 Free PMC article.

6

Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.

Fouquier J, Rideout JR, Bolyen E, Chase J, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST. Fouquier J, et al. Among authors: knight r. Microbiome. 2016 Feb 24;4:11. doi: 10.1186/s40168-016-0153-6. Microbiome. 2016. PMID: 26905735 Free PMC article.

7

Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R. Weiss S, et al. Among authors: knight r. Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y. Microbiome. 2017. PMID: 28253908 Free PMC article.

8

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Langille MG, et al. Among authors: knight r. Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25. Nat Biotechnol. 2013. PMID: 23975157 Free PMC article.

9

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. Koren O, et al. Among authors: knight r. PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10. PLoS Comput Biol. 2013. PMID: 23326225 Free PMC article.

10

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences.

Soergel DA, Dey N, Knight R, Brenner SE. Soergel DA, et al. Among authors: knight r. ISME J. 2012 Jul;6(7):1440-4. doi: 10.1038/ismej.2011.208. Epub 2012 Jan 12. ISME J. 2012. PMID: 22237546 Free PMC article.

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