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Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
Midlik A, Navrátilová V, Moturu TR, Koča J, Svobodová R, Berka K. Midlik A, et al. Among authors: koca j. Sci Rep. 2021 Jun 11;11(1):12345. doi: 10.1038/s41598-021-91494-8. Sci Rep. 2021. PMID: 34117311 Free PMC article.
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels.
Berka K, Hanák O, Sehnal D, Banás P, Navrátilová V, Jaiswal D, Ionescu CM, Svobodová Vareková R, Koca J, Otyepka M. Berka K, et al. Among authors: koca j. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W222-7. doi: 10.1093/nar/gks363. Epub 2012 May 2. Nucleic Acids Res. 2012. PMID: 22553366 Free PMC article.
Anatomy of enzyme channels.
Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M. Pravda L, et al. Among authors: koca j. BMC Bioinformatics. 2014 Nov 18;15(1):379. doi: 10.1186/s12859-014-0379-x. BMC Bioinformatics. 2014. PMID: 25403510 Free PMC article.
ChannelsDB: database of biomacromolecular tunnels and pores.
Pravda L, Sehnal D, Svobodová Vareková R, Navrátilová V, Toušek D, Berka K, Otyepka M, Koca J. Pravda L, et al. Among authors: koca j. Nucleic Acids Res. 2018 Jan 4;46(D1):D399-D405. doi: 10.1093/nar/gkx868. Nucleic Acids Res. 2018. PMID: 29036719 Free PMC article.
High-performance macromolecular data delivery and visualization for the web.
Sehnal D, Svobodová R, Berka K, Rose AS, Burley SK, Velankar S, Koča J. Sehnal D, et al. Among authors: koca j. Acta Crystallogr D Struct Biol. 2020 Dec 1;76(Pt 12):1167-1173. doi: 10.1107/S2059798320014515. Epub 2020 Nov 26. Acta Crystallogr D Struct Biol. 2020. PMID: 33263322 Free PMC article.
Automated Family-Wide Annotation of Secondary Structure Elements.
Midlik A, Hutařová Vařeková I, Hutař J, Moturu TR, Navrátilová V, Koča J, Berka K, Svobodová Vařeková R. Midlik A, et al. Among authors: koca j. Methods Mol Biol. 2019;1958:47-71. doi: 10.1007/978-1-4939-9161-7_3. Methods Mol Biol. 2019. PMID: 30945213
139 results