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Regulation of ribosomal RNA gene copy number and its role in modulating genome integrity and evolutionary adaptability in yeast.
Kobayashi T. Kobayashi T. Cell Mol Life Sci. 2011 Apr;68(8):1395-403. doi: 10.1007/s00018-010-0613-2. Epub 2011 Jan 5. Cell Mol Life Sci. 2011. PMID: 21207101 Free PMC article. Review.
Transcription-dependent recombination and the role of fork collision in yeast rDNA.
Takeuchi Y, Horiuchi T, Kobayashi T. Takeuchi Y, et al. Among authors: kobayashi t. Genes Dev. 2003 Jun 15;17(12):1497-506. doi: 10.1101/gad.1085403. Epub 2003 Jun 3. Genes Dev. 2003. PMID: 12783853 Free PMC article.
The replication fork barrier site forms a unique structure with Fob1p and inhibits the replication fork.
Kobayashi T. Kobayashi T. Mol Cell Biol. 2003 Dec;23(24):9178-88. doi: 10.1128/mcb.23.24.9178-9188.2003. Mol Cell Biol. 2003. PMID: 14645529 Free PMC article.
SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast.
Kobayashi T, Horiuchi T, Tongaonkar P, Vu L, Nomura M. Kobayashi T, et al. Cell. 2004 May 14;117(4):441-53. doi: 10.1016/s0092-8674(04)00414-3. Cell. 2004. PMID: 15137938
Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting.
Ganley AR, Hayashi K, Horiuchi T, Kobayashi T. Ganley AR, et al. Among authors: kobayashi t. Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11787-92. doi: 10.1073/pnas.0504905102. Epub 2005 Aug 4. Proc Natl Acad Sci U S A. 2005. PMID: 16081534 Free PMC article.
Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats.
Kobayashi T, Ganley AR. Kobayashi T, et al. Science. 2005 Sep 2;309(5740):1581-4. doi: 10.1126/science.1116102. Science. 2005. PMID: 16141077
Strategies to maintain the stability of the ribosomal RNA gene repeats--collaboration of recombination, cohesion, and condensation.
Kobayashi T. Kobayashi T. Genes Genet Syst. 2006 Jun;81(3):155-61. doi: 10.1266/ggs.81.155. Genes Genet Syst. 2006. PMID: 16905869 Review.
Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast.
Ide S, Watanabe K, Watanabe H, Shirahige K, Kobayashi T, Maki H. Ide S, et al. Among authors: kobayashi t. Mol Cell Biol. 2007 Jan;27(2):568-78. doi: 10.1128/MCB.00731-06. Epub 2006 Nov 13. Mol Cell Biol. 2007. PMID: 17101800 Free PMC article.
Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data.
Ganley AR, Kobayashi T. Ganley AR, et al. Among authors: kobayashi t. Genome Res. 2007 Feb;17(2):184-91. doi: 10.1101/gr.5457707. Epub 2007 Jan 2. Genome Res. 2007. PMID: 17200233 Free PMC article.
Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.
Kasahara K, Ohtsuki K, Ki S, Aoyama K, Takahashi H, Kobayashi T, Shirahige K, Kokubo T. Kasahara K, et al. Among authors: kobayashi t. Mol Cell Biol. 2007 Oct;27(19):6686-705. doi: 10.1128/MCB.00876-07. Epub 2007 Jul 23. Mol Cell Biol. 2007. PMID: 17646381 Free PMC article.
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