Koh KD - Search Results

1

Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2.

Malfatti MC, Balachander S, Antoniali G, Koh KD, Saint-Pierre C, Gasparutto D, Chon H, Crouch RJ, Storici F, Tell G. Malfatti MC, et al. Among authors: koh kd. Nucleic Acids Res. 2017 Nov 2;45(19):11193-11212. doi: 10.1093/nar/gkx723. Nucleic Acids Res. 2017. PMID: 28977421 Free PMC article.

2

Unlike the Escherichia coli counterpart, archaeal RNase HII cannot process ribose monophosphate abasic sites and oxidized ribonucleotides embedded in DNA.

Malfatti MC, Henneke G, Balachander S, Koh KD, Newnam G, Uehara R, Crouch RJ, Storici F, Tell G. Malfatti MC, et al. Among authors: koh kd. J Biol Chem. 2019 Aug 30;294(35):13061-13072. doi: 10.1074/jbc.RA119.009493. Epub 2019 Jul 12. J Biol Chem. 2019. PMID: 31300556 Free PMC article.

3

Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H.

Shen Y, Koh KD, Weiss B, Storici F. Shen Y, et al. Among authors: koh kd. Nat Struct Mol Biol. 2011 Dec 4;19(1):98-104. doi: 10.1038/nsmb.2176. Nat Struct Mol Biol. 2011. PMID: 22139012

4

Aptamer-guided gene targeting in yeast and human cells.

Ruff P, Koh KD, Keskin H, Pai RB, Storici F. Ruff P, et al. Among authors: koh kd. Nucleic Acids Res. 2014 Apr;42(7):e61. doi: 10.1093/nar/gku101. Epub 2014 Feb 5. Nucleic Acids Res. 2014. PMID: 24500205 Free PMC article.

5

Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.

Koh KD, Balachander S, Hesselberth JR, Storici F. Koh KD, et al. Nat Methods. 2015 Mar;12(3):251-7, 3 p following 257. doi: 10.1038/nmeth.3259. Epub 2015 Jan 26. Nat Methods. 2015. PMID: 25622106 Free PMC article.

6

Measuring the elasticity of ribonucleotide(s)-containing DNA molecules using AFM.

Koh KD, Chiu HC, Riedo E, Storici F. Koh KD, et al. Methods Mol Biol. 2015;1297:43-57. doi: 10.1007/978-1-4939-2562-9_3. Methods Mol Biol. 2015. PMID: 25895994

7

Capture of Ribonucleotides in Yeast Genomic DNA Using Ribose-Seq.

Balachander S, Yang T, Newnam G, El-Sayed WMM, Koh KD, Storici F. Balachander S, et al. Among authors: koh kd. Methods Mol Biol. 2019;2049:17-37. doi: 10.1007/978-1-4939-9736-7_2. Methods Mol Biol. 2019. PMID: 31602603 Free PMC article.

8

Addendum: Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.

Koh KD, Balachander S, Hesselberth JR, Storici F. Koh KD, et al. Nat Methods. 2019 Aug;16(8):787-788. doi: 10.1038/s41592-019-0505-9. Nat Methods. 2019. PMID: 31324896 Free PMC article. No abstract available.

9

Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine.

Balachander S, Gombolay AL, Yang T, Xu P, Newnam G, Keskin H, El-Sayed WMM, Bryksin AV, Tao S, Bowen NE, Schinazi RF, Kim B, Koh KD, Vannberg FO, Storici F. Balachander S, et al. Among authors: koh kd. Nat Commun. 2020 May 15;11(1):2447. doi: 10.1038/s41467-020-16152-5. Nat Commun. 2020. PMID: 32415081 Free PMC article.

10

RNA intrusions change DNA elastic properties and structure.

Chiu HC, Koh KD, Evich M, Lesiak AL, Germann MW, Bongiorno A, Riedo E, Storici F. Chiu HC, et al. Among authors: koh kd. Nanoscale. 2014 Sep 7;6(17):10009-17. doi: 10.1039/c4nr01794c. Nanoscale. 2014. PMID: 24992674

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