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Requirements for the formal representation of pathophysiology mechanisms by clinicians.
de Bono B, Helvensteijn M, Kokash N, Martorelli I, Sarwar D, Islam S, Grenon P, Hunter P. de Bono B, et al. Among authors: Kokash N. Interface Focus. 2016 Apr 6;6(2):20150099. doi: 10.1098/rsfs.2015.0099. Interface Focus. 2016. PMID: 27051514 Free PMC article.
The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units.
de Bono B, Safaei S, Grenon P, Nickerson DP, Alexander S, Helvensteijn M, Kok JN, Kokash N, Wu A, Yu T, Hunter P, Baldock RA. de Bono B, et al. Among authors: Kok JN, Kokash N. Front Physiol. 2015 Feb 24;6:24. doi: 10.3389/fphys.2015.00024. eCollection 2015. Front Physiol. 2015. PMID: 25759670 Free PMC article.
Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model Exchange in Drug Development.
Swat MJ, Moodie S, Wimalaratne SM, Kristensen NR, Lavielle M, Mari A, Magni P, Smith MK, Bizzotto R, Pasotti L, Mezzalana E, Comets E, Sarr C, Terranova N, Blaudez E, Chan P, Chard J, Chatel K, Chenel M, Edwards D, Franklin C, Giorgino T, Glont M, Girard P, Grenon P, Harling K, Hooker AC, Kaye R, Keizer R, Kloft C, Kok JN, Kokash N, Laibe C, Laveille C, Lestini G, Mentré F, Munafo A, Nordgren R, Nyberg HB, Parra-Guillen ZP, Plan E, Ribba B, Smith G, Trocóniz IF, Yvon F, Milligan PA, Harnisch L, Karlsson M, Hermjakob H, Le Novère N. Swat MJ, et al. Among authors: Kok JN, Kokash N. CPT Pharmacometrics Syst Pharmacol. 2015 Jun;4(6):316-9. doi: 10.1002/psp4.57. Epub 2015 Jun 15. CPT Pharmacometrics Syst Pharmacol. 2015. PMID: 26225259 Free PMC article.
Model Description Language (MDL): A Standard for Modeling and Simulation.
Smith MK, Moodie SL, Bizzotto R, Blaudez E, Borella E, Carrara L, Chan P, Chenel M, Comets E, Gieschke R, Harling K, Harnisch L, Hartung N, Hooker AC, Karlsson MO, Kaye R, Kloft C, Kokash N, Lavielle M, Lestini G, Magni P, Mari A, Mentré F, Muselle C, Nordgren R, Nyberg HB, Parra-Guillén ZP, Pasotti L, Rode-Kristensen N, Sardu ML, Smith GR, Swat MJ, Terranova N, Yngman G, Yvon F, Holford N; DDMoRe consortium. Smith MK, et al. Among authors: Kokash N. CPT Pharmacometrics Syst Pharmacol. 2017 Oct;6(10):647-650. doi: 10.1002/psp4.12222. Epub 2017 Jul 12. CPT Pharmacometrics Syst Pharmacol. 2017. PMID: 28643440 Free PMC article. No abstract available.
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