Koller D - Search Results

1

A protein domain-based interactome network for C. elegans early embryogenesis.

Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M. Boxem M, et al. Among authors: koller d. Cell. 2008 Aug 8;134(3):534-45. doi: 10.1016/j.cell.2008.07.009. Cell. 2008. PMID: 18692475 Free PMC article.

2

InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale.

Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D. Wang H, et al. Among authors: koller d. Genome Biol. 2007;8(9):R192. doi: 10.1186/gb-2007-8-9-r192. Genome Biol. 2007. PMID: 17868464 Free PMC article.

3

A complex-based reconstruction of the Saccharomyces cerevisiae interactome.

Wang H, Kakaradov B, Collins SR, Karotki L, Fiedler D, Shales M, Shokat KM, Walther TC, Krogan NJ, Koller D. Wang H, et al. Among authors: koller d. Mol Cell Proteomics. 2009 Jun;8(6):1361-81. doi: 10.1074/mcp.M800490-MCP200. Epub 2009 Jan 27. Mol Cell Proteomics. 2009. PMID: 19176519 Free PMC article.

4

Functional organization of the S. cerevisiae phosphorylation network.

Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ. Fiedler D, et al. Among authors: koller d. Cell. 2009 Mar 6;136(5):952-63. doi: 10.1016/j.cell.2008.12.039. Cell. 2009. PMID: 19269370 Free PMC article.

5

Probabilistic discovery of overlapping cellular processes and their regulation.

Battle A, Segal E, Koller D. Battle A, et al. Among authors: koller d. J Comput Biol. 2005 Sep;12(7):909-27. doi: 10.1089/cmb.2005.12.909. J Comput Biol. 2005. PMID: 16201912 Review.

6

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Segal E, et al. Among authors: koller d. Nat Genet. 2003 Jun;34(2):166-76. doi: 10.1038/ng1165. Nat Genet. 2003. PMID: 12740579

7

A gene-coexpression network for global discovery of conserved genetic modules.

Stuart JM, Segal E, Koller D, Kim SK. Stuart JM, et al. Among authors: koller d. Science. 2003 Oct 10;302(5643):249-55. doi: 10.1126/science.1087447. Epub 2003 Aug 21. Science. 2003. PMID: 12934013

8

A module map showing conditional activity of expression modules in cancer.

Segal E, Friedman N, Koller D, Regev A. Segal E, et al. Among authors: koller d. Nat Genet. 2004 Oct;36(10):1090-8. doi: 10.1038/ng1434. Epub 2004 Sep 26. Nat Genet. 2004. PMID: 15448693

9

From signatures to models: understanding cancer using microarrays.

Segal E, Friedman N, Kaminski N, Regev A, Koller D. Segal E, et al. Among authors: koller d. Nat Genet. 2005 Jun;37 Suppl:S38-45. doi: 10.1038/ng1561. Nat Genet. 2005. PMID: 15920529 Review.

10

Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.

Lee SI, Pe'er D, Dudley AM, Church GM, Koller D. Lee SI, et al. Among authors: koller d. Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14062-7. doi: 10.1073/pnas.0601852103. Epub 2006 Sep 12. Proc Natl Acad Sci U S A. 2006. PMID: 16968785 Free PMC article.

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