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Dysbiosis and the immune system.
Levy M, Kolodziejczyk AA, Thaiss CA, Elinav E. Levy M, et al. Among authors: kolodziejczyk aa. Nat Rev Immunol. 2017 Apr;17(4):219-232. doi: 10.1038/nri.2017.7. Epub 2017 Mar 6. Nat Rev Immunol. 2017. PMID: 28260787 Review.
The role of the microbiome in NAFLD and NASH.
Kolodziejczyk AA, Zheng D, Shibolet O, Elinav E. Kolodziejczyk AA, et al. EMBO Mol Med. 2019 Feb;11(2):e9302. doi: 10.15252/emmm.201809302. EMBO Mol Med. 2019. PMID: 30591521 Free PMC article. Review.
Bile acids in glucose metabolism in health and disease.
Shapiro H, Kolodziejczyk AA, Halstuch D, Elinav E. Shapiro H, et al. Among authors: kolodziejczyk aa. J Exp Med. 2018 Feb 5;215(2):383-396. doi: 10.1084/jem.20171965. Epub 2018 Jan 16. J Exp Med. 2018. PMID: 29339445 Free PMC article. Review.
G1 cyclins link proliferation, pluripotency and differentiation of embryonic stem cells.
Liu L, Michowski W, Inuzuka H, Shimizu K, Nihira NT, Chick JM, Li N, Geng Y, Meng AY, Ordureau A, Kołodziejczyk A, Ligon KL, Bronson RT, Polyak K, Harper JW, Gygi SP, Wei W, Sicinski P. Liu L, et al. Among authors: kolodziejczyk a. Nat Cell Biol. 2017 Mar;19(3):177-188. doi: 10.1038/ncb3474. Epub 2017 Feb 13. Nat Cell Biol. 2017. PMID: 28192421 Free PMC article.
Stem cells migration during skeletal muscle regeneration - the role of Sdf-1/Cxcr4 and Sdf-1/Cxcr7 axis.
Kowalski K, Kołodziejczyk A, Sikorska M, Płaczkiewicz J, Cichosz P, Kowalewska M, Stremińska W, Jańczyk-Ilach K, Koblowska M, Fogtman A, Iwanicka-Nowicka R, Ciemerych MA, Brzoska E. Kowalski K, et al. Among authors: kolodziejczyk a. Cell Adh Migr. 2017 Jul 4;11(4):384-398. doi: 10.1080/19336918.2016.1227911. Epub 2016 Oct 13. Cell Adh Migr. 2017. PMID: 27736296 Free PMC article.
Accounting for technical noise in single-cell RNA-seq experiments.
Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Brennecke P, et al. Among authors: kolodziejczyk aa. Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Nat Methods. 2013. PMID: 24056876
Establishment of mouse expanded potential stem cells.
Yang J, Ryan DJ, Wang W, Tsang JC, Lan G, Masaki H, Gao X, Antunes L, Yu Y, Zhu Z, Wang J, Kolodziejczyk AA, Campos LS, Wang C, Yang F, Zhong Z, Fu B, Eckersley-Maslin MA, Woods M, Tanaka Y, Chen X, Wilkinson AC, Bussell J, White J, Ramirez-Solis R, Reik W, Göttgens B, Teichmann SA, Tam PPL, Nakauchi H, Zou X, Lu L, Liu P. Yang J, et al. Among authors: kolodziejczyk aa. Nature. 2017 Oct 19;550(7676):393-397. doi: 10.1038/nature24052. Epub 2017 Oct 11. Nature. 2017. PMID: 29019987 Free PMC article.
Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation.
Natarajan KN, Teichmann SA, Kolodziejczyk AA. Natarajan KN, et al. Among authors: kolodziejczyk aa. Curr Opin Genet Dev. 2017 Oct;46:66-76. doi: 10.1016/j.gde.2017.06.003. Epub 2017 Jul 1. Curr Opin Genet Dev. 2017. PMID: 28675884 Review.
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression.
Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC. Kim JK, et al. Among authors: kolodziejczyk aa. Nat Commun. 2015 Oct 22;6:8687. doi: 10.1038/ncomms9687. Nat Commun. 2015. PMID: 26489834 Free PMC article.
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation.
Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Cell Stem Cell. 2015 Oct 1;17(4):471-85. doi: 10.1016/j.stem.2015.09.011. Cell Stem Cell. 2015. PMID: 26431182 Free PMC article.
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