Kominek J - Search Results

1

Genomics and the making of yeast biodiversity.

Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP. Hittinger CT, et al. Among authors: kominek j. Curr Opin Genet Dev. 2015 Dec;35:100-9. doi: 10.1016/j.gde.2015.10.008. Epub 2015 Nov 30. Curr Opin Genet Dev. 2015. PMID: 26649756 Free PMC article. Review.

2

Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora hagerdaliae f. a., sp. nov. and Spathaspora gorwiae f. a., sp. nov.

Lopes MR, Morais CG, Kominek J, Cadete RM, Soares MA, Uetanabaro AP, Fonseca C, Lachance MA, Hittinger CT, Rosa CA. Lopes MR, et al. Among authors: kominek j. FEMS Yeast Res. 2016 Jun;16(4):fow044. doi: 10.1093/femsyr/fow044. Epub 2016 May 1. FEMS Yeast Res. 2016. PMID: 27188884

3

In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.

Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. Zhou X, et al. Among authors: kominek j. G3 (Bethesda). 2016 Nov 8;6(11):3655-3662. doi: 10.1534/g3.116.034249. G3 (Bethesda). 2016. PMID: 27638685 Free PMC article.

4

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data.

Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. Shen XX, et al. Among authors: kominek j. G3 (Bethesda). 2016 Dec 7;6(12):3927-3939. doi: 10.1534/g3.116.034744. G3 (Bethesda). 2016. PMID: 27672114 Free PMC article.

5

Genome sequence and physiological analysis of Yamadazyma laniorum f.a. sp. nov. and a reevaluation of the apocryphal xylose fermentation of its sister species, Candida tenuis.

Haase MAB, Kominek J, Langdon QK, Kurtzman CP, Hittinger CT. Haase MAB, et al. Among authors: kominek j. FEMS Yeast Res. 2017 May 1;17(3):fox019. doi: 10.1093/femsyr/fox019. FEMS Yeast Res. 2017. PMID: 28419220 Free PMC article.

6

Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade.

Morais CG, Batista TM, Kominek J, Borelli BM, Furtado C, Moreira RG, Franco GR, Rosa LH, Fonseca C, Hittinger CT, Lachance MA, Rosa CA. Morais CG, et al. Among authors: kominek j. Int J Syst Evol Microbiol. 2017 Oct;67(10):3798-3805. doi: 10.1099/ijsem.0.002186. Epub 2017 Sep 8. Int J Syst Evol Microbiol. 2017. PMID: 28884677

7

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage.

Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Gonçalves C, et al. Among authors: kominek j. Elife. 2018 Apr 12;7:e33034. doi: 10.7554/eLife.33034. Elife. 2018. PMID: 29648535 Free PMC article.

8

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH. Krassowski T, et al. Among authors: kominek j. Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7. Nat Commun. 2018. PMID: 29760453 Free PMC article.

9

Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution.

Kuang MC, Kominek J, Alexander WG, Cheng JF, Wrobel RL, Hittinger CT. Kuang MC, et al. Among authors: kominek j. Mol Biol Evol. 2018 Aug 1;35(8):1968-1981. doi: 10.1093/molbev/msy102. Mol Biol Evol. 2018. PMID: 29788479 Free PMC article.

10

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts.

Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Krause DJ, et al. Among authors: kominek j. Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):11030-11035. doi: 10.1073/pnas.1806268115. Epub 2018 Oct 8. Proc Natl Acad Sci U S A. 2018. PMID: 30297402 Free PMC article.

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