Konagaya A - Search Results

1

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome.

Sakurai T, Satou M, Akiyama K, Iida K, Seki M, Kuromori T, Ito T, Konagaya A, Toyoda T, Shinozaki K. Sakurai T, et al. Among authors: konagaya a. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D647-50. doi: 10.1093/nar/gki014. Nucleic Acids Res. 2005. PMID: 15608280 Free PMC article.

2

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.

Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K. Iida K, et al. Among authors: konagaya a. Nucleic Acids Res. 2004 Sep 27;32(17):5096-103. doi: 10.1093/nar/gkh845. Print 2004. Nucleic Acids Res. 2004. PMID: 15452276 Free PMC article.

3

RARTF: database and tools for complete sets of Arabidopsis transcription factors.

Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K. Iida K, et al. Among authors: konagaya a. DNA Res. 2005;12(4):247-56. doi: 10.1093/dnares/dsi011. DNA Res. 2005. PMID: 16769687 Free article.

4

KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data.

Toyoda T, Konagaya A. Toyoda T, et al. Among authors: konagaya a. Bioinformatics. 2003 Feb 12;19(3):433-4. doi: 10.1093/bioinformatics/btf874. Bioinformatics. 2003. PMID: 12584137

5

GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs.

Toyoda T, Mochizuki Y, Konagaya A. Toyoda T, et al. Among authors: konagaya a. Bioinformatics. 2003 Feb 12;19(3):437-8. doi: 10.1093/bioinformatics/btg001. Bioinformatics. 2003. PMID: 12584139

6

A flexible representation of omic knowledge for thorough analysis of microarray data.

Hasegawa Y, Seki M, Mochizuki Y, Heida N, Hirosawa K, Okamoto N, Sakurai T, Satou M, Akiyama K, Iida K, Lee K, Kanaya S, Demura T, Shinozaki K, Konagaya A, Toyoda T. Hasegawa Y, et al. Among authors: konagaya a. Plant Methods. 2006 Mar 2;2:5. doi: 10.1186/1746-4811-2-5. Plant Methods. 2006. PMID: 16509996 Free PMC article.

7

TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks.

Heida N, Hasegawa Y, Mochizuki Y, Hirosawa K, Konagaya A, Toyoda T. Heida N, et al. Among authors: konagaya a. Bioinformatics. 2004 Aug 4;20 Suppl 1:i152-60. doi: 10.1093/bioinformatics/bth940. Bioinformatics. 2004. PMID: 15262794

8

Automatic quantification of morphological traits via three-dimensional measurement of Arabidopsis.

Kaminuma E, Heida N, Tsumoto Y, Yamamoto N, Goto N, Okamoto N, Konagaya A, Matsui M, Toyoda T. Kaminuma E, et al. Among authors: konagaya a. Plant J. 2004 Apr;38(2):358-65. doi: 10.1111/j.1365-313X.2004.02042.x. Plant J. 2004. PMID: 15078337 Free article.

9

Three-dimensional definition of leaf morphological traits of Arabidopsis in silico phenotypic analysis.

Kaminuma E, Heida N, Tsumoto Y, Nakazawa M, Goto N, Konagaya A, Matsui M, Toyoda T. Kaminuma E, et al. Among authors: konagaya a. J Bioinform Comput Biol. 2005 Apr;3(2):401-14. doi: 10.1142/s0219720005001119. J Bioinform Comput Biol. 2005. PMID: 15852512

10

FREP: a database of functional repeats in mouse cDNAs.

Nagashima T, Matsuda H, Silva DG, Petrovsky N, Konagaya A, Schönbach C, Kasukawa T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y; RIKEN GER Group; Genome Science Laoratory Members. Nagashima T, et al. Among authors: konagaya a. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D471-5. doi: 10.1093/nar/gkh123. Nucleic Acids Res. 2004. PMID: 14681460 Free PMC article.

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