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Topological features of rugged fitness landscapes in sequence space.
Kondrashov DA, Kondrashov FA. Kondrashov DA, et al. Trends Genet. 2015 Jan;31(1):24-33. doi: 10.1016/j.tig.2014.09.009. Epub 2014 Oct 15. Trends Genet. 2015. PMID: 25438718 Review.
Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain.
Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN Jr. Bitto E, et al. Among authors: kondrashov da. J Biol Chem. 2008 Oct 31;283(44):30184-92. doi: 10.1074/jbc.M804746200. Epub 2008 Aug 19. J Biol Chem. 2008. PMID: 18713742 Free PMC article.
Creating protein models from electron-density maps using particle-filtering methods.
DiMaio F, Kondrashov DA, Bitto E, Soni A, Bingman CA, Phillips GN Jr, Shavlik JW. DiMaio F, et al. Among authors: kondrashov da. Bioinformatics. 2007 Nov 1;23(21):2851-8. doi: 10.1093/bioinformatics/btm480. Epub 2007 Oct 12. Bioinformatics. 2007. PMID: 17933855 Free PMC article.
Ensemble refinement of protein crystal structures: validation and application.
Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN Jr. Levin EJ, et al. Among authors: kondrashov da. Structure. 2007 Sep;15(9):1040-52. doi: 10.1016/j.str.2007.06.019. Structure. 2007. PMID: 17850744 Free PMC article.
Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family.
Bitto E, Bingman CA, Kondrashov DA, McCoy JG, Bannen RM, Wesenberg GE, Phillips GN Jr. Bitto E, et al. Among authors: kondrashov da. Proteins. 2008 Jan 1;70(1):93-104. doi: 10.1002/prot.21468. Proteins. 2008. PMID: 17634982
Protein structural variation in computational models and crystallographic data.
Kondrashov DA, Van Wynsberghe AW, Bannen RM, Cui Q, Phillips GN Jr. Kondrashov DA, et al. Structure. 2007 Feb;15(2):169-77. doi: 10.1016/j.str.2006.12.006. Structure. 2007. PMID: 17292835 Free PMC article.
Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP.
McCoy JG, Bitto E, Bingman CA, Wesenberg GE, Bannen RM, Kondrashov DA, Phillips GN Jr. McCoy JG, et al. Among authors: kondrashov da. J Mol Biol. 2007 Feb 23;366(3):830-41. doi: 10.1016/j.jmb.2006.11.059. Epub 2006 Nov 21. J Mol Biol. 2007. PMID: 17178129 Free PMC article.
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