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The COG database: a tool for genome-scale analysis of protein functions and evolution.
Tatusov RL, Galperin MY, Natale DA, Koonin EV. Tatusov RL, et al. Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33. Nucleic Acids Res. 2000. PMID: 10592175 Free PMC article.
Archaebacterial virus SSV1 encodes a putative DnaA-like protein.
Koonin EV. Koonin EV. Nucleic Acids Res. 1992 Mar 11;20(5):1143. doi: 10.1093/nar/20.5.1143. Nucleic Acids Res. 1992. PMID: 1549481 Free PMC article. No abstract available.
Detection of new genes in a bacterial genome using Markov models for three gene classes.
Borodovsky M, McIninch JD, Koonin EV, Rudd KE, M├ędigue C, Danchin A. Borodovsky M, et al. Nucleic Acids Res. 1995 Sep 11;23(17):3554-62. doi: 10.1093/nar/23.17.3554. Nucleic Acids Res. 1995. PMID: 7567469 Free PMC article.
A simple tool to search for sequence motifs that are conserved in BLAST outputs.
Tatusov RL, Koonin EV. Tatusov RL, et al. Comput Appl Biosci. 1994 Jul;10(4):457-9. doi: 10.1093/bioinformatics/10.4.457. Comput Appl Biosci. 1994. PMID: 7804881 No abstract available.
Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.
Borodovsky M, Rudd KE, Koonin EV. Borodovsky M, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4756-67. doi: 10.1093/nar/22.22.4756. Nucleic Acids Res. 1994. PMID: 7984428 Free PMC article.
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