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Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life.
Prangishvili D, Garrett RA, Koonin EV. Prangishvili D, et al. Among authors: koonin ev. Virus Res. 2006 Apr;117(1):52-67. doi: 10.1016/j.virusres.2006.01.007. Epub 2006 Feb 28. Virus Res. 2006. PMID: 16503363 Review.
Evolution of thymidine and thymidylate kinases: the possibility of independent capture of TK genes by different groups of viruses.
Koonin EV, Senkevich TG. Koonin EV, et al. Virus Genes. 1992 Apr;6(2):187-96. doi: 10.1007/BF01703067. Virus Genes. 1992. PMID: 1317076
Evolution of RNA genomes: does the high mutation rate necessitate high rate of evolution of viral proteins?
Koonin EV, Gorbalenya AE. Koonin EV, et al. J Mol Evol. 1989 Jun;28(6):524-7. doi: 10.1007/BF02602932. J Mol Evol. 1989. PMID: 2504927
Chilo iridescent virus encodes a putative helicase belonging to a distinct family within the "DEAD/H" superfamily: implications for the evolution of large DNA viruses.
Sonntag KC, Schnitzler P, Koonin EV, Darai G. Sonntag KC, et al. Among authors: koonin ev. Virus Genes. 1994 Mar;8(2):151-8. doi: 10.1007/BF01703072. Virus Genes. 1994. PMID: 8073636
Nucleotide sequence of XhoI O fragment of ectromelia virus DNA reveals significant differences from vaccinia virus.
Senkevich TG, Muravnik GL, Pozdnyakov SG, Chizhikov VE, Ryazankina OI, Shchelkunov SN, Koonin EV, Chernos VI. Senkevich TG, et al. Among authors: koonin ev. Virus Res. 1993 Oct;30(1):73-88. doi: 10.1016/0168-1702(93)90017-h. Virus Res. 1993. PMID: 8266721
Fowlpox virus encodes a protein related to human deoxycytidine kinase: further evidence for independent acquisition of genes for enzymes of nucleotide metabolism by different viruses.
Koonin EV, Senkevich TG. Koonin EV, et al. Virus Genes. 1993 Sep;7(3):289-95. doi: 10.1007/BF01702589. Virus Genes. 1993. PMID: 8279127
Gene A32 product of vaccinia virus may be an ATPase involved in viral DNA packaging as indicated by sequence comparisons with other putative viral ATPases.
Koonin EV, Senkevich TG, Chernos VI. Koonin EV, et al. Virus Genes. 1993 Feb;7(1):89-94. doi: 10.1007/BF01702351. Virus Genes. 1993. PMID: 8470370
Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics.
Koonin EV, Mushegian AR. Koonin EV, et al. Curr Opin Genet Dev. 1996 Dec;6(6):757-62. doi: 10.1016/s0959-437x(96)80032-3. Curr Opin Genet Dev. 1996. PMID: 8994848 Review.
Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.
Koonin EV, Mushegian AR, Galperin MY, Walker DR. Koonin EV, et al. Mol Microbiol. 1997 Aug;25(4):619-37. doi: 10.1046/j.1365-2958.1997.4821861.x. Mol Microbiol. 1997. PMID: 9379893
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: koonin ev. Genome Res. 1999 Jul;9(7):608-28. Genome Res. 1999. PMID: 10413400
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