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SWISS-MODEL: An automated protein homology-modeling server.
Schwede T, Kopp J, Guex N, Peitsch MC. Schwede T, et al. Among authors: kopp j. Nucleic Acids Res. 2003 Jul 1;31(13):3381-5. doi: 10.1093/nar/gkg520. Nucleic Acids Res. 2003. PMID: 12824332 Free PMC article.
Assessment of CASP7 predictions for template-based modeling targets.
Kopp J, Bordoli L, Battey JN, Kiefer F, Schwede T. Kopp J, et al. Proteins. 2007;69 Suppl 8:38-56. doi: 10.1002/prot.21753. Proteins. 2007. PMID: 17894352
Automated server predictions in CASP7.
Battey JN, Kopp J, Bordoli L, Read RJ, Clarke ND, Schwede T. Battey JN, et al. Among authors: kopp j. Proteins. 2007;69 Suppl 8:68-82. doi: 10.1002/prot.21761. Proteins. 2007. PMID: 17894354
The SWISS-MODEL Repository: new features and functionalities.
Kopp J, Schwede T. Kopp J, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D315-8. doi: 10.1093/nar/gkj056. Nucleic Acids Res. 2006. PMID: 16381875 Free PMC article.
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.
Arnold K, Bordoli L, Kopp J, Schwede T. Arnold K, et al. Among authors: kopp j. Bioinformatics. 2006 Jan 15;22(2):195-201. doi: 10.1093/bioinformatics/bti770. Epub 2005 Nov 13. Bioinformatics. 2006. PMID: 16301204
Automated protein structure homology modeling: a progress report.
Kopp J, Schwede T. Kopp J, et al. Pharmacogenomics. 2004 Jun;5(4):405-16. doi: 10.1517/14622416.5.4.405. Pharmacogenomics. 2004. PMID: 15165176 Review.
The protein structure initiative structural genomics knowledgebase.
Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J. Berman HM, et al. Among authors: kopp j. Nucleic Acids Res. 2009 Jan;37(Database issue):D365-8. doi: 10.1093/nar/gkn790. Epub 2008 Nov 14. Nucleic Acids Res. 2009. PMID: 19010965 Free PMC article.
The Protein Model Portal.
Arnold K, Kiefer F, Kopp J, Battey JN, Podvinec M, Westbrook JD, Berman HM, Bordoli L, Schwede T. Arnold K, et al. Among authors: kopp j. J Struct Funct Genomics. 2009 Mar;10(1):1-8. doi: 10.1007/s10969-008-9048-5. Epub 2008 Nov 27. J Struct Funct Genomics. 2009. PMID: 19037750 Free PMC article.
Domain definition and target classification for CASP7.
Clarke ND, Ezkurdia I, Kopp J, Read RJ, Schwede T, Tress M. Clarke ND, et al. Among authors: kopp j. Proteins. 2007;69 Suppl 8:10-8. doi: 10.1002/prot.21686. Proteins. 2007. PMID: 17654725
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