Koppstein D - Search Results

1

Global analyses of the effect of different cellular contexts on microRNA targeting.

Nam JW, Rissland OS, Koppstein D, Abreu-Goodger C, Jan CH, Agarwal V, Yildirim MA, Rodriguez A, Bartel DP. Nam JW, et al. Among authors: koppstein d. Mol Cell. 2014 Mar 20;53(6):1031-1043. doi: 10.1016/j.molcel.2014.02.013. Epub 2014 Mar 13. Mol Cell. 2014. PMID: 24631284 Free PMC article.

2

Extensive alternative polyadenylation during zebrafish development.

Ulitsky I, Shkumatava A, Jan CH, Subtelny AO, Koppstein D, Bell GW, Sive H, Bartel DP. Ulitsky I, et al. Among authors: koppstein d. Genome Res. 2012 Oct;22(10):2054-66. doi: 10.1101/gr.139733.112. Epub 2012 Jun 21. Genome Res. 2012. PMID: 22722342 Free PMC article.

3

Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation.

Koppstein D, Ashour J, Bartel DP. Koppstein D, et al. Nucleic Acids Res. 2015 May 26;43(10):5052-64. doi: 10.1093/nar/gkv333. Epub 2015 Apr 21. Nucleic Acids Res. 2015. PMID: 25901029 Free PMC article.

4

Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species.

Hezroni H, Koppstein D, Schwartz MG, Avrutin A, Bartel DP, Ulitsky I. Hezroni H, et al. Among authors: koppstein d. Cell Rep. 2015 May 19;11(7):1110-22. doi: 10.1016/j.celrep.2015.04.023. Epub 2015 May 7. Cell Rep. 2015. PMID: 25959816 Free PMC article.

5

The RNA polymerase "switch region" is a target for inhibitors.

Mukhopadhyay J, Das K, Ismail S, Koppstein D, Jang M, Hudson B, Sarafianos S, Tuske S, Patel J, Jansen R, Irschik H, Arnold E, Ebright RH. Mukhopadhyay J, et al. Among authors: koppstein d. Cell. 2008 Oct 17;135(2):295-307. doi: 10.1016/j.cell.2008.09.033. Cell. 2008. PMID: 18957204 Free PMC article.

6

The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression.

Bujanic L, Shevchuk O, von Kügelgen N, Kalinina A, Ludwik K, Koppstein D, Zerna N, Sickmann A, Chekulaeva M. Bujanic L, et al. Among authors: koppstein d. RNA. 2022 May;28(5):766-779. doi: 10.1261/rna.079086.121. Epub 2022 Mar 1. RNA. 2022. PMID: 35232816 Free PMC article.

7

Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy.

Wyler E, Mösbauer K, Franke V, Diag A, Gottula LT, Arsiè R, Klironomos F, Koppstein D, Hönzke K, Ayoub S, Buccitelli C, Hoffmann K, Richter A, Legnini I, Ivanov A, Mari T, Del Giudice S, Papies J, Praktiknjo S, Meyer TF, Müller MA, Niemeyer D, Hocke A, Selbach M, Akalin A, Rajewsky N, Drosten C, Landthaler M. Wyler E, et al. Among authors: koppstein d. iScience. 2021 Mar 19;24(3):102151. doi: 10.1016/j.isci.2021.102151. Epub 2021 Feb 6. iScience. 2021. PMID: 33585804 Free PMC article.

8

Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody.

Singh M, Jackson KJL, Wang JJ, Schofield P, Field MA, Koppstein D, Peters TJ, Burnett DL, Rizzetto S, Nevoltris D, Masle-Farquhar E, Faulks ML, Russell A, Gokal D, Hanioka A, Horikawa K, Colella AD, Chataway TK, Blackburn J, Mercer TR, Langley DB, Goodall DM, Jefferis R, Gangadharan Komala M, Kelleher AD, Suan D, Rischmueller M, Christ D, Brink R, Luciani F, Gordon TP, Goodnow CC, Reed JH. Singh M, et al. Among authors: koppstein d. Cell. 2020 Mar 5;180(5):878-894.e19. doi: 10.1016/j.cell.2020.01.029. Epub 2020 Feb 13. Cell. 2020. PMID: 32059783 Free article.

9

B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.

Rizzetto S, Koppstein DNP, Samir J, Singh M, Reed JH, Cai CH, Lloyd AR, Eltahla AA, Goodnow CC, Luciani F. Rizzetto S, et al. Among authors: koppstein dnp. Bioinformatics. 2018 Aug 15;34(16):2846-2847. doi: 10.1093/bioinformatics/bty203. Bioinformatics. 2018. PMID: 29659703

10

Biodegradation of polyester polyurethane by endophytic fungi.

Russell JR, Huang J, Anand P, Kucera K, Sandoval AG, Dantzler KW, Hickman D, Jee J, Kimovec FM, Koppstein D, Marks DH, Mittermiller PA, Núñez SJ, Santiago M, Townes MA, Vishnevetsky M, Williams NE, Vargas MP, Boulanger LA, Bascom-Slack C, Strobel SA. Russell JR, et al. Among authors: koppstein d. Appl Environ Microbiol. 2011 Sep;77(17):6076-84. doi: 10.1128/AEM.00521-11. Epub 2011 Jul 15. Appl Environ Microbiol. 2011. PMID: 21764951 Free PMC article.

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