Korobeynikov A - Search Results

1

Single cell genome analysis of an uncultured heterotrophic stramenopile.

Roy RS, Price DC, Schliep A, Cai G, Korobeynikov A, Yoon HS, Yang EC, Bhattacharya D. Roy RS, et al. Among authors: korobeynikov a. Sci Rep. 2014 Apr 24;4:4780. doi: 10.1038/srep04780. Sci Rep. 2014. PMID: 24759094 Free PMC article.

2

A novel uncultured heterotrophic bacterial associate of the cyanobacterium Moorea producens JHB.

Cummings ME, Barbé D, Leao TF, Korobeynikov A, Engene N, Glukhov E, Gerwick WH, Gerwick L. Cummings ME, et al. Among authors: korobeynikov a. BMC Microbiol. 2016 Aug 30;16(1):198. doi: 10.1186/s12866-016-0817-1. BMC Microbiol. 2016. PMID: 27577966 Free PMC article.

3

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.

Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA. Nurk S, et al. Among authors: korobeynikov a. J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084. J Comput Biol. 2013. PMID: 24093227 Free PMC article.

4

BayesHammer: Bayesian clustering for error correction in single-cell sequencing.

Nikolenko SI, Korobeynikov AI, Alekseyev MA. Nikolenko SI, et al. Among authors: korobeynikov ai. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S7. doi: 10.1186/1471-2164-14-S1-S7. Epub 2013 Jan 21. BMC Genomics. 2013. PMID: 23368723 Free PMC article.

5

Using SPAdes De Novo Assembler.

Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. Prjibelski A, et al. Among authors: korobeynikov a. Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102. Curr Protoc Bioinformatics. 2020. PMID: 32559359

6

Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways.

Coates RC, Podell S, Korobeynikov A, Lapidus A, Pevzner P, Sherman DH, Allen EE, Gerwick L, Gerwick WH. Coates RC, et al. Among authors: korobeynikov a. PLoS One. 2014 Jan 27;9(1):e85140. doi: 10.1371/journal.pone.0085140. eCollection 2014. PLoS One. 2014. PMID: 24475038 Free PMC article.

7

Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea.

Leao T, Castelão G, Korobeynikov A, Monroe EA, Podell S, Glukhov E, Allen EE, Gerwick WH, Gerwick L. Leao T, et al. Among authors: korobeynikov a. Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3198-3203. doi: 10.1073/pnas.1618556114. Epub 2017 Mar 6. Proc Natl Acad Sci U S A. 2017. PMID: 28265051 Free PMC article.

8

Metagenomic Data Assembly - The Way of Decoding Unknown Microorganisms.

Lapidus AL, Korobeynikov AI. Lapidus AL, et al. Front Microbiol. 2021 Mar 23;12:613791. doi: 10.3389/fmicb.2021.613791. eCollection 2021. Front Microbiol. 2021. PMID: 33833738 Free PMC article. Review.

9

ExSPAnder: a universal repeat resolver for DNA fragment assembly.

Prjibelski AD, Vasilinetc I, Bankevich A, Gurevich A, Krivosheeva T, Nurk S, Pham S, Korobeynikov A, Lapidus A, Pevzner PA. Prjibelski AD, et al. Among authors: korobeynikov a. Bioinformatics. 2014 Jun 15;30(12):i293-301. doi: 10.1093/bioinformatics/btu266. Bioinformatics. 2014. PMID: 24931996 Free PMC article.

10

Assembling short reads from jumping libraries with large insert sizes.

Vasilinetc I, Prjibelski AD, Gurevich A, Korobeynikov A, Pevzner PA. Vasilinetc I, et al. Among authors: korobeynikov a. Bioinformatics. 2015 Oct 15;31(20):3262-8. doi: 10.1093/bioinformatics/btv337. Epub 2015 Jun 3. Bioinformatics. 2015. PMID: 26040456

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