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[Regulation of transcription in the system of genes responsible for bacteriocins production in Streptococcus equi ].
Kotel'nikova EA, Gel'fand MS. Kotel'nikova EA, et al. Genetika. 2002 Jul;38(7):911-5. Genetika. 2002. PMID: 12174583 Russian.
Evolution of transcription factor DNA binding sites.
Kotelnikova EA, Makeev VJ, Gelfand MS. Kotelnikova EA, et al. Gene. 2005 Mar 14;347(2):255-63. doi: 10.1016/j.gene.2004.12.013. Epub 2005 Feb 17. Gene. 2005. PMID: 15725380
A model of evolution with constant selective pressure for regulatory DNA sites.
Enikeeva FN, Kotelnikova EA, Gelfand MS, Makeev VJ. Enikeeva FN, et al. BMC Evol Biol. 2007 Jul 27;7:125. doi: 10.1186/1471-2148-7-125. BMC Evol Biol. 2007. PMID: 17662135 Free PMC article.
[Production of bacteriocins by gram-positive bacteria and the mechanisms of transcriptional regulation].
Kotel'nikova EA, Gel'fand MS. Kotel'nikova EA, et al. Genetika. 2002 Jun;38(6):758-72. Genetika. 2002. PMID: 12138775 Review. Russian.
Computational approaches for drug repositioning and combination therapy design.
Kotelnikova E, Yuryev A, Mazo I, Daraselia N. Kotelnikova E, et al. J Bioinform Comput Biol. 2010 Jun;8(3):593-606. doi: 10.1142/s0219720010004732. J Bioinform Comput Biol. 2010. PMID: 20556864
Novel approach to meta-analysis of microarray datasets reveals muscle remodeling-related drug targets and biomarkers in Duchenne muscular dystrophy.
Kotelnikova E, Shkrob MA, Pyatnitskiy MA, Ferlini A, Daraselia N. Kotelnikova E, et al. PLoS Comput Biol. 2012 Feb;8(2):e1002365. doi: 10.1371/journal.pcbi.1002365. Epub 2012 Feb 2. PLoS Comput Biol. 2012. PMID: 22319435 Free PMC article.
Signaling networks in MS: a systems-based approach to developing new pharmacological therapies.
Kotelnikova E, Bernardo-Faura M, Silberberg G, Kiani NA, Messinis D, Melas IN, Artigas L, Schwartz E, Mazo I, Masso M, Alexopoulos LG, Mas JM, Olsson T, Tegner J, Martin R, Zamora A, Paul F, Saez-Rodriguez J, Villoslada P. Kotelnikova E, et al. Mult Scler. 2015 Feb;21(2):138-46. doi: 10.1177/1352458514543339. Epub 2014 Aug 11. Mult Scler. 2015. PMID: 25112814 Review.
Clustering gene expression regulators: new approach to disease subtyping.
Pyatnitskiy M, Mazo I, Shkrob M, Schwartz E, Kotelnikova E. Pyatnitskiy M, et al. PLoS One. 2014 Jan 9;9(1):e84955. doi: 10.1371/journal.pone.0084955. eCollection 2014. PLoS One. 2014. PMID: 24416320 Free PMC article.
Ariadne's ChemEffect and Pathway Studio knowledge base.
Yuryev A, Kotelnikova E, Daraselia N. Yuryev A, et al. Expert Opin Drug Discov. 2009 Dec;4(12):1307-18. doi: 10.1517/17460440903413488. Expert Opin Drug Discov. 2009. PMID: 23480468
Knowledge retrieval from PubMed abstracts and electronic medical records with the Multiple Sclerosis Ontology.
Malhotra A, G√ľndel M, Rajput AM, Mevissen HT, Saiz A, Pastor X, Lozano-Rubi R, Martinez-Lapiscina EH, Zubizarreta I, Mueller B, Kotelnikova E, Toldo L, Hofmann-Apitius M, Villoslada P. Malhotra A, et al. PLoS One. 2015 Feb 9;10(2):e0116718. doi: 10.1371/journal.pone.0116718. eCollection 2015. PLoS One. 2015. PMID: 25665127 Free PMC article.
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