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PBP active site flexibility as the key mechanism for beta-lactam resistance in pneumococci.
Contreras-Martel C, Dahout-Gonzalez C, Martins Ados S, Kotnik M, Dessen A. Contreras-Martel C, et al. Among authors: kotnik m. J Mol Biol. 2009 Apr 10;387(4):899-909. doi: 10.1016/j.jmb.2009.02.024. Epub 2009 Feb 20. J Mol Biol. 2009. PMID: 19233207
Structural and functional characterization of enantiomeric glutamic acid derivatives as potential transition state analogue inhibitors of MurD ligase.
Kotnik M, Humljan J, Contreras-Martel C, Oblak M, Kristan K, Hervé M, Blanot D, Urleb U, Gobec S, Dessen A, Solmajer T. Kotnik M, et al. J Mol Biol. 2007 Jun 29;370(1):107-15. doi: 10.1016/j.jmb.2007.04.048. Epub 2007 May 4. J Mol Biol. 2007. PMID: 17507028
Crystallographic Study of Peptidoglycan Biosynthesis Enzyme MurD: Domain Movement Revisited.
Šink R, Kotnik M, Zega A, Barreteau H, Gobec S, Blanot D, Dessen A, Contreras-Martel C. Šink R, et al. Among authors: kotnik m. PLoS One. 2016 Mar 31;11(3):e0152075. doi: 10.1371/journal.pone.0152075. eCollection 2016. PLoS One. 2016. PMID: 27031227 Free PMC article.
Novel naphthalene-N-sulfonyl-D-glutamic acid derivatives as inhibitors of MurD, a key peptidoglycan biosynthesis enzyme.
Humljan J, Kotnik M, Contreras-Martel C, Blanot D, Urleb U, Dessen A, Solmajer T, Gobec S. Humljan J, et al. Among authors: kotnik m. J Med Chem. 2008 Dec 11;51(23):7486-94. doi: 10.1021/jm800762u. J Med Chem. 2008. PMID: 19007109
Flavonoids and cinnamic acid esters as inhibitors of fungal 17beta-hydroxysteroid dehydrogenase: a synthesis, QSAR and modelling study.
Sova M, Perdih A, Kotnik M, Kristan K, Rizner TL, Solmajer T, Gobec S. Sova M, et al. Bioorg Med Chem. 2006 Nov 15;14(22):7404-18. doi: 10.1016/j.bmc.2006.07.027. Epub 2006 Aug 7. Bioorg Med Chem. 2006. PMID: 16891119
Biophysical characterization of an indolinone inhibitor in the ATP-binding site of DNA gyrase.
Oblak M, Grdadolnik SG, Kotnik M, Poterszman A, Atkinson RA, Nierengarten H, Desplancq D, Moras D, Solmajer T. Oblak M, et al. Biochem Biophys Res Commun. 2006 Nov 3;349(4):1206-13. doi: 10.1016/j.bbrc.2006.08.172. Epub 2006 Sep 7. Biochem Biophys Res Commun. 2006. PMID: 16979583
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