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Crystallographic Study of the LUMI Intermediate of Squid Rhodopsin.
Murakami M, Kouyama T. Murakami M, et al. Among authors: kouyama t. PLoS One. 2015 May 29;10(5):e0126970. doi: 10.1371/journal.pone.0126970. eCollection 2015. PLoS One. 2015. PMID: 26024518 Free PMC article.
Crystallization and crystal properties of squid rhodopsin.
Murakami M, Kitahara R, Gotoh T, Kouyama T. Murakami M, et al. Among authors: kouyama t. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jun 1;63(Pt 6):475-9. doi: 10.1107/S1744309107017423. Epub 2007 May 5. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007. PMID: 17554166 Free PMC article.
Crystal structure of the M intermediate of bacteriorhodopsin: allosteric structural changes mediated by sliding movement of a transmembrane helix.
Takeda K, Matsui Y, Kamiya N, Adachi S, Okumura H, Kouyama T. Takeda K, et al. Among authors: kouyama t. J Mol Biol. 2004 Aug 20;341(4):1023-37. doi: 10.1016/j.jmb.2004.06.080. J Mol Biol. 2004. PMID: 15328615
An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes.
Hino T, Kanamori E, Shen JR, Kouyama T. Hino T, et al. Among authors: kouyama t. Acta Crystallogr D Biol Crystallogr. 2004 May;60(Pt 5):803-9. doi: 10.1107/S0907444904003233. Epub 2004 Apr 21. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15103124
Specific damage induced by X-ray radiation and structural changes in the primary photoreaction of bacteriorhodopsin.
Matsui Y, Sakai K, Murakami M, Shiro Y, Adachi Si, Okumura H, Kouyama T. Matsui Y, et al. Among authors: kouyama t. J Mol Biol. 2002 Nov 29;324(3):469-81. doi: 10.1016/s0022-2836(02)01110-5. J Mol Biol. 2002. PMID: 12445782
Crystal structure of the L intermediate of bacteriorhodopsin: evidence for vertical translocation of a water molecule during the proton pumping cycle.
Kouyama T, Nishikawa T, Tokuhisa T, Okumura H. Kouyama T, et al. J Mol Biol. 2004 Jan 9;335(2):531-46. doi: 10.1016/j.jmb.2003.10.068. J Mol Biol. 2004. PMID: 14672661
Three-Step Isomerization of the Retinal Chromophore during the Anion Pumping Cycle of Halorhodopsin.
Kouyama T, Ihara K, Maki K, Chan SK. Kouyama T, et al. Biochemistry. 2018 Oct 16;57(41):6013-6026. doi: 10.1021/acs.biochem.8b00631. Epub 2018 Oct 2. Biochemistry. 2018. PMID: 30211543
Functionally important structural elements of the cyanobacterial clock-related protein Pex.
Kurosawa S, Murakami R, Onai K, Morishita M, Hasegawa D, Iwase R, Uzumaki T, Hayashi F, Kitajima-Ihara T, Sakata S, Murakami M, Kouyama T, Ishiura M. Kurosawa S, et al. Among authors: kouyama t. Genes Cells. 2009 Jan;14(1):1-16. doi: 10.1111/j.1365-2443.2008.01245.x. Epub 2008 Nov 21. Genes Cells. 2009. PMID: 19032344
Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States.
Chan SK, Kawaguchi H, Kubo H, Murakami M, Ihara K, Maki K, Kouyama T. Chan SK, et al. Among authors: kouyama t. Biochemistry. 2016 Jul 26;55(29):4092-104. doi: 10.1021/acs.biochem.6b00277. Epub 2016 Jul 13. Biochemistry. 2016. PMID: 27352034
Crystal structures of the L1, L2, N, and O states of pharaonis halorhodopsin.
Kouyama T, Kawaguchi H, Nakanishi T, Kubo H, Murakami M. Kouyama T, et al. Biophys J. 2015 Jun 2;108(11):2680-90. doi: 10.1016/j.bpj.2015.04.027. Biophys J. 2015. PMID: 26039169 Free PMC article.
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