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Structural classification of small, disulfide-rich protein domains.
Cheek S, Krishna SS, Grishin NV. Cheek S, et al. J Mol Biol. 2006 May 26;359(1):215-37. doi: 10.1016/j.jmb.2006.03.017. Epub 2006 Mar 29. J Mol Biol. 2006. PMID: 16618491
A tale of two ferredoxins: sequence similarity and structural differences.
Krishna SS, Sadreyev RI, Grishin NV. Krishna SS, et al. BMC Struct Biol. 2006 Apr 9;6:8. doi: 10.1186/1472-6807-6-8. BMC Struct Biol. 2006. PMID: 16603087 Free PMC article.
Structural drift: a possible path to protein fold change.
Krishna SS, Grishin NV. Krishna SS, et al. Bioinformatics. 2005 Apr 15;21(8):1308-10. doi: 10.1093/bioinformatics/bti227. Epub 2004 Dec 16. Bioinformatics. 2005. PMID: 15604105
4SCOPmap: automated assignment of protein structures to evolutionary superfamilies.
Cheek S, Qi Y, Krishna SS, Kinch LN, Grishin NV. Cheek S, et al. BMC Bioinformatics. 2004 Dec 14;5:197. doi: 10.1186/1471-2105-5-197. BMC Bioinformatics. 2004. PMID: 15598351 Free PMC article.
Structural classification of zinc fingers: survey and summary.
Krishna SS, Majumdar I, Grishin NV. Krishna SS, et al. Nucleic Acids Res. 2003 Jan 15;31(2):532-50. doi: 10.1093/nar/gkg161. Nucleic Acids Res. 2003. PMID: 12527760 Free PMC article.
CASP5 assessment of fold recognition target predictions.
Kinch LN, Wrabl JO, Krishna SS, Majumdar I, Sadreyev RI, Qi Y, Pei J, Cheng H, Grishin NV. Kinch LN, et al. Proteins. 2003;53 Suppl 6:395-409. doi: 10.1002/prot.10557. Proteins. 2003. PMID: 14579328
Representing and comparing protein structures as paths in three-dimensional space.
Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Zhi D, et al. BMC Bioinformatics. 2006 Oct 20;7:460. doi: 10.1186/1471-2105-7-460. BMC Bioinformatics. 2006. PMID: 17052359 Free PMC article.
Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.
Kozbial P, Xu Q, Chiu HJ, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Carlton D, Clayton T, Deller M, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Spraggon G, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. Kozbial P, et al. Proteins. 2008 May 15;71(3):1589-96. doi: 10.1002/prot.22020. Proteins. 2008. PMID: 18324683 No abstract available.
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