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BayesMD: flexible biological modeling for motif discovery.
Tang MH, Krogh A, Winther O. Tang MH, et al. J Comput Biol. 2008 Dec;15(10):1347-63. doi: 10.1089/cmb.2007.0176. J Comput Biol. 2008. PMID: 19040368
Modeling promoter grammars with evolving hidden Markov models.
Won KJ, Sandelin A, Marstrand TT, Krogh A. Won KJ, et al. Bioinformatics. 2008 Aug 1;24(15):1669-75. doi: 10.1093/bioinformatics/btn254. Epub 2008 Jun 5. Bioinformatics. 2008. PMID: 18535083
Hidden Markov Models for prediction of protein features.
Bystroff C, Krogh A. Bystroff C, et al. Methods Mol Biol. 2008;413:173-98. doi: 10.1007/978-1-59745-574-9_7. Methods Mol Biol. 2008. PMID: 18075166 Review.
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