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Page 1
Coupling proton movement to ATP synthesis in the chloroplast ATP synthase.
Richter ML, Samra HS, He F, Giessel AJ, Kuczera KK. Richter ML, et al. Among authors: kuczera kk. J Bioenerg Biomembr. 2005 Dec;37(6):467-73. doi: 10.1007/s10863-005-9493-9. J Bioenerg Biomembr. 2005. PMID: 16691485 Review.
Catalytic strategy of S-adenosyl-L-homocysteine hydrolase: transition-state stabilization and the avoidance of abortive reactions.
Yang X, Hu Y, Yin DH, Turner MA, Wang M, Borchardt RT, Howell PL, Kuczera K, Schowen RL. Yang X, et al. Among authors: kuczera k. Biochemistry. 2003 Feb 25;42(7):1900-9. doi: 10.1021/bi0262350. Biochemistry. 2003. PMID: 12590576
Domain motions and the open-to-closed conformational transition of an enzyme: a normal mode analysis of S-adenosyl-L-homocysteine hydrolase.
Wang M, Borchardt RT, Schowen RL, Kuczera K. Wang M, et al. Among authors: kuczera k. Biochemistry. 2005 May 17;44(19):7228-39. doi: 10.1021/bi047524m. Biochemistry. 2005. PMID: 15882061
Effects of ligand binding and oxidation on hinge-bending motions in S-adenosyl-L-homocysteine hydrolase.
Wang M, Unruh JR, Johnson CK, Kuczera K, Schowen RL, Borchardt RT. Wang M, et al. Among authors: kuczera k. Biochemistry. 2006 Jun 27;45(25):7778-86. doi: 10.1021/bi0523106. Biochemistry. 2006. PMID: 16784229
Molecular dynamics simulations of domain motions of substrate-free S-adenosyl- L-homocysteine hydrolase in solution.
Hu C, Fang J, Borchardt RT, Schowen RL, Kuczera K. Hu C, et al. Among authors: kuczera k. Proteins. 2008 Apr;71(1):131-43. doi: 10.1002/prot.21664. Proteins. 2008. PMID: 17932938
Evaluation of NAD(H) analogues as selective inhibitors for Trypanosoma cruzi S-adenosylhomocysteine hydrolase.
Li QS, Cai S, Fang J, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL. Li QS, et al. Among authors: kuczera k. Nucleosides Nucleotides Nucleic Acids. 2009 May;28(5):473-84. doi: 10.1080/15257770903044572. Nucleosides Nucleotides Nucleic Acids. 2009. PMID: 20183597 Free PMC article.
Milestoning simulation reveals mechanism of helix-breaking.
Kuczera K. Kuczera K. Biophys J. 2013 Aug 20;105(4):832. doi: 10.1016/j.bpj.2013.06.034. Biophys J. 2013. PMID: 23972831 Free PMC article. No abstract available.
Kinetic pathway analysis of an α-helix in two protonation states: Direct observation and optimal dimensionality reduction.
Jas GS, Childs EW, Kuczera K. Jas GS, et al. Among authors: kuczera k. J Chem Phys. 2019 Feb 21;150(7):074902. doi: 10.1063/1.5082192. J Chem Phys. 2019. PMID: 30795683
Computational characterization of substrate binding and catalysis in S-adenosylhomocysteine hydrolase.
Hu Y, Yang X, Yin DH, Mahadevan J, Kuczera K, Schowen RL, Borchardt RT. Hu Y, et al. Among authors: kuczera k. Biochemistry. 2001 Dec 18;40(50):15143-52. doi: 10.1021/bi015690d. Biochemistry. 2001. PMID: 11735397
., Kuczera, K., Borchardt, R. T., and Howell, P. L. (2000) Cell Biochem. Biophys. 33, 101-125]. To investigate the binding of natural substrates during catalysis, the computational docking program AutoDock (with confirming calculations using CHARMM) was used to predict the …
., Kuczera, K., Borchardt, R. T., and Howell, P. L. (2000) Cell Biochem. Biophys. 33, 101-125]. To investigate the binding of natural …
Conformational heterogeneity of a leucine enkephalin analogue in aqueous solution and sodium dodecyl sulfate micelles: comparison of time-resolved FRET and molecular dynamics simulations.
Unruh JR, Kuczera K, Johnson CK. Unruh JR, et al. Among authors: kuczera k. J Phys Chem B. 2009 Oct 29;113(43):14381-92. doi: 10.1021/jp903302k. J Phys Chem B. 2009. PMID: 19780516 Free PMC article.
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