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MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T. Katoh K, et al. Nucleic Acids Res. 2005 Jan 20;33(2):511-8. doi: 10.1093/nar/gki198. Print 2005. Nucleic Acids Res. 2005. PMID: 15661851 Free PMC article.
Sequence similarity of bacteriophage SP02 DNA polymerase with E. coli DNA polymerase I.
Iwabe N, Kuma K, Miyata T. Iwabe N, et al. Nucleic Acids Res. 1989 Nov 11;17(21):8866. doi: 10.1093/nar/17.21.8866. Nucleic Acids Res. 1989. PMID: 2685750 Free PMC article. No abstract available.
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
Katoh K, Kuma K, Miyata T. Katoh K, et al. J Mol Evol. 2001 Oct-Nov;53(4-5):477-84. doi: 10.1007/s002390010238. J Mol Evol. 2001. PMID: 11675608
An estimate of divergence time of Parazoa and Eumetazoa and that of Cephalochordata and Vertebrata by aldolase and triose phosphate isomerase clocks.
Nikoh N, Iwabe N, Kuma K, Ohno M, Sugiyama T, Watanabe Y, Yasui K, Shi-cui Z, Hori K, Shimura Y, Miyata T. Nikoh N, et al. J Mol Evol. 1997 Jul;45(1):97-106. doi: 10.1007/pl00006208. J Mol Evol. 1997. PMID: 9211740
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