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MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T. Katoh K, et al. Nucleic Acids Res. 2005 Jan 20;33(2):511-8. doi: 10.1093/nar/gki198. Print 2005. Nucleic Acids Res. 2005. PMID: 15661851 Free PMC article.
Positive selection in the ComC-ComD system of Streptococcal Species.
Ichihara H, Kuma K, Toh H. Ichihara H, et al. J Bacteriol. 2006 Sep;188(17):6429-34. doi: 10.1128/JB.00484-06. J Bacteriol. 2006. PMID: 16923913 Free PMC article.
Sequence similarity of bacteriophage SP02 DNA polymerase with E. coli DNA polymerase I.
Iwabe N, Kuma K, Miyata T. Iwabe N, et al. Nucleic Acids Res. 1989 Nov 11;17(21):8866. doi: 10.1093/nar/17.21.8866. Nucleic Acids Res. 1989. PMID: 2685750 Free PMC article. No abstract available.
Identification of rDNA-specific non-LTR retrotransposons in Cnidaria.
Kojima KK, Kuma K, Toh H, Fujiwara H. Kojima KK, et al. Mol Biol Evol. 2006 Oct;23(10):1984-93. doi: 10.1093/molbev/msl067. Epub 2006 Jul 26. Mol Biol Evol. 2006. PMID: 16870681
Identification of cryptochrome DASH from vertebrates.
Daiyasu H, Ishikawa T, Kuma K, Iwai S, Todo T, Toh H. Daiyasu H, et al. Genes Cells. 2004 May;9(5):479-95. doi: 10.1111/j.1356-9597.2004.00738.x. Genes Cells. 2004. PMID: 15147276
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