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DBD--taxonomically broad transcription factor predictions: new content and functionality.
Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. Wilson D, et al. Among authors: kummerfeld sk. Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. doi: 10.1093/nar/gkm964. Epub 2007 Dec 11. Nucleic Acids Res. 2008. PMID: 18073188 Free PMC article.
A census of human transcription factors: function, expression and evolution.
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. Vaquerizas JM, et al. Among authors: kummerfeld sk. Nat Rev Genet. 2009 Apr;10(4):252-63. doi: 10.1038/nrg2538. Nat Rev Genet. 2009. PMID: 19274049 Review.
DBD: a transcription factor prediction database.
Kummerfeld SK, Teichmann SA. Kummerfeld SK, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D74-81. doi: 10.1093/nar/gkj131. Nucleic Acids Res. 2006. PMID: 16381970 Free PMC article.
Relative rates of gene fusion and fission in multi-domain proteins.
Kummerfeld SK, Teichmann SA. Kummerfeld SK, et al. Trends Genet. 2005 Jan;21(1):25-30. doi: 10.1016/j.tig.2004.11.007. Trends Genet. 2005. PMID: 15680510
The SUPERFAMILY database in 2004: additions and improvements.
Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J. Madera M, et al. Among authors: kummerfeld sk. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9. doi: 10.1093/nar/gkh117. Nucleic Acids Res. 2004. PMID: 14681402 Free PMC article.
AMID: autonomous modeler of intragenic duplication.
Kummerfeld SK, Weiss AS, Fekete A, Jermiin LS. Kummerfeld SK, et al. Appl Bioinformatics. 2003;2(3):169-76. Appl Bioinformatics. 2003. PMID: 15130804
Protein domain organisation: adding order.
Kummerfeld SK, Teichmann SA. Kummerfeld SK, et al. BMC Bioinformatics. 2009 Jan 29;10:39. doi: 10.1186/1471-2105-10-39. BMC Bioinformatics. 2009. PMID: 19178743 Free PMC article.
The genome of the social amoeba Dictyostelium discoideum.
Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A. Eichinger L, et al. Nature. 2005 May 5;435(7038):43-57. doi: 10.1038/nature03481. Nature. 2005. PMID: 15875012 Free PMC article.
Non-canonical reader modules of BAZ1A promote recovery from DNA damage.
Oppikofer M, Sagolla M, Haley B, Zhang HM, Kummerfeld SK, Sudhamsu J, Flynn EM, Bai T, Zhang J, Ciferri C, Cochran AG. Oppikofer M, et al. Among authors: kummerfeld sk. Nat Commun. 2017 Oct 11;8(1):862. doi: 10.1038/s41467-017-00866-0. Nat Commun. 2017. PMID: 29021563 Free PMC article.
AGEMAP: a gene expression database for aging in mice.
Zahn JM, Poosala S, Owen AB, Ingram DK, Lustig A, Carter A, Weeraratna AT, Taub DD, Gorospe M, Mazan-Mamczarz K, Lakatta EG, Boheler KR, Xu X, Mattson MP, Falco G, Ko MS, Schlessinger D, Firman J, Kummerfeld SK, Wood WH 3rd, Zonderman AB, Kim SK, Becker KG. Zahn JM, et al. Among authors: kummerfeld sk. PLoS Genet. 2007 Nov;3(11):e201. doi: 10.1371/journal.pgen.0030201. Epub 2007 Oct 2. PLoS Genet. 2007. PMID: 18081424 Free PMC article.
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