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72 results
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A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation.
Kwok CK, Ding Y, Sherlock ME, Assmann SM, Bevilacqua PC. Kwok CK, et al. Anal Biochem. 2013 Apr 15;435(2):181-6. doi: 10.1016/j.ab.2013.01.008. Epub 2013 Jan 31. Anal Biochem. 2013. PMID: 23399535
Decrease in RNA folding cooperativity by deliberate population of intermediates in RNA G-quadruplexes.
Kwok CK, Sherlock ME, Bevilacqua PC. Kwok CK, et al. Angew Chem Int Ed Engl. 2013 Jan 7;52(2):683-6. doi: 10.1002/anie.201206475. Epub 2012 Nov 20. Angew Chem Int Ed Engl. 2013. PMID: 23166020
Effect of loop sequence and loop length on the intrinsic fluorescence of G-quadruplexes.
Kwok CK, Sherlock ME, Bevilacqua PC. Kwok CK, et al. Biochemistry. 2013 May 7;52(18):3019-21. doi: 10.1021/bi400139e. Epub 2013 Apr 26. Biochemistry. 2013. PMID: 23621657
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.
Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Among authors: kwok ck. Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24. Nature. 2014. PMID: 24270811
Determination of in vivo RNA structure in low-abundance transcripts.
Kwok CK, Ding Y, Tang Y, Assmann SM, Bevilacqua PC. Kwok CK, et al. Nat Commun. 2013;4:2971. doi: 10.1038/ncomms3971. Nat Commun. 2013. PMID: 24336128
A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.
Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC. Kwok CK, et al. Biochem J. 2015 Apr 1;467(1):91-102. doi: 10.1042/BJ20141063. Biochem J. 2015. PMID: 25793418
StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y, Bouvier E, Kwok CK, Ding Y, Nekrutenko A, Bevilacqua PC, Assmann SM. Tang Y, et al. Among authors: kwok ck. Bioinformatics. 2015 Aug 15;31(16):2668-75. doi: 10.1093/bioinformatics/btv213. Epub 2015 Apr 16. Bioinformatics. 2015. PMID: 25886980 Free PMC article.
Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.
Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Among authors: kwok ck. Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18. Nat Protoc. 2015. PMID: 26086407
RNA G-quadruplex structures exist and function in vivo in plants.
Yang X, Cheema J, Zhang Y, Deng H, Duncan S, Umar MI, Zhao J, Liu Q, Cao X, Kwok CK, Ding Y. Yang X, et al. Among authors: kwok ck. Genome Biol. 2020 Sep 1;21(1):226. doi: 10.1186/s13059-020-02142-9. Genome Biol. 2020. PMID: 32873317 Free PMC article.
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.
Kwok CK, Tang Y, Assmann SM, Bevilacqua PC. Kwok CK, et al. Trends Biochem Sci. 2015 Apr;40(4):221-32. doi: 10.1016/j.tibs.2015.02.005. Epub 2015 Mar 18. Trends Biochem Sci. 2015. PMID: 25797096 Review.
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