Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Edit custom filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1985 1
1987 4
1989 1
1991 2
1993 4
1994 2
1995 2
1996 2
1997 3
1999 3
2000 6
2001 6
2002 12
2003 4
2004 5
2005 7
2006 13
2007 12
2008 12
2009 7
2010 14
2011 14
2012 16
2013 19
2014 12
2015 17
2016 14
2017 17
2018 41
2019 5
2020 31
2021 5
2022 16
2023 16
2024 4
2025 7
2026 0

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

340 results

Results by year

Filters applied: . Clear all
Page 1
Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
Bhinder B, Friedl V, Sethuraman S, Risso D, Chiotti KE, Mashl RJ, Ellrott KP, Lee JA, Wong CK, Gyan K, Deshpande A, Imielinski M, Bareja R, Stuart J, Peto M, Hoadley KA, Lazar AJ, Cherniack AD, Zhu J, Cao S, Rubin M, Wang W, Bathe OF, Robine N, Ding L, Laird PW, Zhou W, Shen H, Thorsson V, Yeh JJ, Bailey MH, Zhou DC, Peng XL, Goldman M, Li Y, Korkut A, Sahni N, Hayes DN, Mensah MKA, Felau I, Kemal A, Caesar-Johnson S, Demchok JA, Yang L, Ferguson ML, Tarnuzzer R, Wang Z, Zenklusen JC; Cancer Genome Atlas Analysis Network; Spellman P, Elemento O. Bhinder B, et al. Among authors: laird pw. Sci Rep. 2025 Jul 4;15(1):23921. doi: 10.1038/s41598-025-09075-y. Sci Rep. 2025. PMID: 40615649 Free PMC article.
Three-dimensional genome landscape of primary human cancers.
Yost KE, Zhao Y, Hung KL, Zhu K, Xu D, Corces MR, Shams S, Louie BH, Sarmashghi S, Sundaram L, Luebeck J, Clarke S, Doane AS, Granja JM, Choudhry H, Imieliński M, Cherniack AD, Khurana E, Bafna V, Felau I, Zenklusen JC, Laird PW, Curtis C; Cancer Genome Atlas Analysis Network; Greenleaf WJ, Chang HY. Yost KE, et al. Among authors: laird pw. Nat Genet. 2025 May;57(5):1189-1200. doi: 10.1038/s41588-025-02188-0. Epub 2025 May 12. Nat Genet. 2025. PMID: 40355593 Free PMC article.
Protocol for obtaining cancer type and subtype predictions using subSCOPE.
Grewal JK, Robertson AG, Ellrott K, Wong CK, Lee JA, Yau C, Tercan B, Castro MAA, Benz CC; Cancer Genome Atlas Analysis Network; Zenklusen JC, Cherniack AD, Laird PW, Jones SJM. Grewal JK, et al. Among authors: laird pw. STAR Protoc. 2025 Jun 20;6(2):103705. doi: 10.1016/j.xpro.2025.103705. Epub 2025 Apr 10. STAR Protoc. 2025. PMID: 40202838 Free PMC article.
Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
Tercan B, Apolonio VH, Chagas VS, Wong CK, Lee JA, Yau C, Benz CC, Stuart JM, Karlberg BJ, Ellrott K, Grewal JK, Jones SJM; Cancer Genome Atlas Analysis Network; Zenklusen JC, Robertson AG, Laird PW, Cherniack AD, Castro MAA. Tercan B, et al. Among authors: laird pw. STAR Protoc. 2025 Jun 20;6(2):103681. doi: 10.1016/j.xpro.2025.103681. Epub 2025 Mar 18. STAR Protoc. 2025. PMID: 40106435 Free PMC article.
Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA; Cancer Genome Atlas Analysis Network; Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW. Ellrott K, et al. Among authors: laird pw. Cancer Cell. 2025 Feb 10;43(2):195-212.e11. doi: 10.1016/j.ccell.2024.12.002. Epub 2025 Jan 2. Cancer Cell. 2025. PMID: 39753139 Free PMC article.
Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.
Sundaram L, Kumar A, Zatzman M, Salcedo A, Ravindra N, Shams S, Louie BH, Bagdatli ST, Myers MA, Sarmashghi S, Choi HY, Choi WY, Yost KE, Zhao Y, Granja JM, Hinoue T, Hayes DN, Cherniack A, Felau I, Choudhry H, Zenklusen JC, Farh KK, McPherson A, Curtis C, Laird PW; Cancer Genome Atlas Analysis Network‡; Demchok JA, Yang L, Tarnuzzer R, Caesar-Johnson SJ, Wang Z, Doane AS, Khurana E, Castro MAA, Lazar AJ, Broom BM, Weinstein JN, Akbani R, Kumar SV, Raphael BJ, Wong CK, Stuart JM, Safavi R, Benz CC, Johnson BK, Kyi C, Shen H, Corces MR, Chang HY, Greenleaf WJ. Sundaram L, et al. Among authors: laird pw. Science. 2024 Sep 6;385(6713):eadk9217. doi: 10.1126/science.adk9217. Epub 2024 Sep 6. Science. 2024. PMID: 39236169 Free PMC article.
340 results