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MOPED: Model Organism Protein Expression Database.
Kolker E, Higdon R, Haynes W, Welch D, Broomall W, Lancet D, Stanberry L, Kolker N. Kolker E, et al. Among authors: lancet d. Nucleic Acids Res. 2012 Jan;40(Database issue):D1093-9. doi: 10.1093/nar/gkr1177. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139914 Free PMC article.
MOPED enables discoveries through consistently processed proteomics data.
Higdon R, Stewart E, Stanberry L, Haynes W, Choiniere J, Montague E, Anderson N, Yandl G, Janko I, Broomall W, Fishilevich S, Lancet D, Kolker N, Kolker E. Higdon R, et al. Among authors: lancet d. J Proteome Res. 2014 Jan 3;13(1):107-13. doi: 10.1021/pr400884c. Epub 2013 Dec 18. J Proteome Res. 2014. PMID: 24350770 Free PMC article.
Genic insights from integrated human proteomics in GeneCards.
Fishilevich S, Zimmerman S, Kohn A, Iny Stein T, Olender T, Kolker E, Safran M, Lancet D. Fishilevich S, et al. Among authors: lancet d. Database (Oxford). 2016 Apr 5;2016:baw030. doi: 10.1093/database/baw030. Print 2016. Database (Oxford). 2016. PMID: 27048349 Free PMC article.
Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, Macnealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G. Kolker E, et al. Among authors: lancet d. OMICS. 2014 Jan;18(1):10-4. doi: 10.1089/omi.2013.0149. OMICS. 2014. PMID: 24456465 Free PMC article.
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, MacNealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G. Kolker E, et al. Among authors: lancet d. Big Data. 2013 Dec;1(4):196-201. doi: 10.1089/big.2013.0039. Big Data. 2013. PMID: 27447251
In-silico human genomics with GeneCards.
Stelzer G, Dalah I, Stein TI, Satanower Y, Rosen N, Nativ N, Oz-Levi D, Olender T, Belinky F, Bahir I, Krug H, Perco P, Mayer B, Kolker E, Safran M, Lancet D. Stelzer G, et al. Among authors: lancet d. Hum Genomics. 2011 Oct;5(6):709-17. doi: 10.1186/1479-7364-5-6-709. Hum Genomics. 2011. PMID: 22155609 Free PMC article.
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2; Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang … See abstract for full author list ➔ Genome Information Integration Project And H-Invitational 2, et al. Among authors: lancet d. Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. doi: 10.1093/nar/gkm999. Epub 2007 Dec 18. Nucleic Acids Res. 2008. PMID: 18089548 Free PMC article.
Reproducibility: In praise of open research measures.
Kolker E, Altintas I, Bourne P, Faris J, Fox G, Frishman D, Geraci C, Hancock W, Lin B, Lancet D, Lisitsa A, Knight R, Martens L, Mesirov J, Özdemir V, Schultes E, Smith T, Snyder M, Srivastava S, Toppo S, Wilmes P. Kolker E, et al. Among authors: lancet d. Nature. 2013 Jun 13;498(7453):170. doi: 10.1038/498170b. Nature. 2013. PMID: 23765483 No abstract available.
250 results