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CDD: conserved domains and protein three-dimensional structure.
Marchler-Bauer A, Zheng C, Chitsaz F, Derbyshire MK, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Lu S, Marchler GH, Song JS, Thanki N, Yamashita RA, Zhang D, Bryant SH. Marchler-Bauer A, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2013 Jan;41(Database issue):D348-52. doi: 10.1093/nar/gks1243. Epub 2012 Nov 28. Nucleic Acids Res. 2013. PMID: 23197659 Free PMC article.
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Geer LY, Bryant SH. Marchler-Bauer A, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2017 Jan 4;45(D1):D200-D203. doi: 10.1093/nar/gkw1129. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899674 Free PMC article.
CDD: NCBI's conserved domain database.
Marchler-Bauer A, Derbyshire MK, Gonzales NR, Lu S, Chitsaz F, Geer LY, Geer RC, He J, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Bryant SH. Marchler-Bauer A, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2015 Jan;43(Database issue):D222-6. doi: 10.1093/nar/gku1221. Epub 2014 Nov 20. Nucleic Acids Res. 2015. PMID: 25414356 Free PMC article.
CDD: a Conserved Domain Database for the functional annotation of proteins.
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH. Marchler-Bauer A, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. doi: 10.1093/nar/gkq1189. Epub 2010 Nov 24. Nucleic Acids Res. 2011. PMID: 21109532 Free PMC article.
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH. Marchler-Bauer A, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2009 Jan;37(Database issue):D205-10. doi: 10.1093/nar/gkn845. Epub 2008 Nov 4. Nucleic Acids Res. 2009. PMID: 18984618 Free PMC article.
State of the art: refinement of multiple sequence alignments.
Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Chakrabarti S, et al. Among authors: lanczycki cj. BMC Bioinformatics. 2006 Nov 14;7:499. doi: 10.1186/1471-2105-7-499. BMC Bioinformatics. 2006. PMID: 17105653 Free PMC article.
Refining multiple sequence alignments with conserved core regions.
Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Chakrabarti S, et al. Among authors: lanczycki cj. Nucleic Acids Res. 2006 May 17;34(9):2598-606. doi: 10.1093/nar/gkl274. Print 2006. Nucleic Acids Res. 2006. PMID: 16707662 Free PMC article.
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