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51 results
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ASCOT identifies key regulators of neuronal subtype-specific splicing.
Ling JP, Wilks C, Charles R, Leavey PJ, Ghosh D, Jiang L, Santiago CP, Pang B, Venkataraman A, Clark BS, Nellore A, Langmead B, Blackshaw S. Ling JP, et al. Among authors: langmead b. Nat Commun. 2020 Jan 9;11(1):137. doi: 10.1038/s41467-019-14020-5. Nat Commun. 2020. PMID: 31919425 Free PMC article.
Recounting the FANTOM CAGE-Associated Transcriptome.
Imada EL, Sanchez DF, Collado-Torres L, Wilks C, Matam T, Dinalankara W, Stupnikov A, Lobo-Pereira F, Yip CW, Yasuzawa K, Kondo N, Itoh M, Suzuki H, Kasukawa T, Hon CC, de Hoon MJL, Shin JW, Carninci P, Jaffe AE, Leek JT, Favorov A, Franco GR, Langmead B, Marchionni L. Imada EL, et al. Among authors: langmead b. Genome Res. 2020 Jul;30(7):1073-1081. doi: 10.1101/gr.254656.119. Epub 2020 Feb 20. Genome Res. 2020. PMID: 32079618 Free PMC article.
Searching for SNPs with cloud computing.
Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL. Langmead B, et al. Genome Biol. 2009;10(11):R134. doi: 10.1186/gb-2009-10-11-r134. Epub 2009 Nov 20. Genome Biol. 2009. PMID: 19930550 Free PMC article.
Cloud computing and the DNA data race.
Schatz MC, Langmead B, Salzberg SL. Schatz MC, et al. Among authors: langmead b. Nat Biotechnol. 2010 Jul;28(7):691-3. doi: 10.1038/nbt0710-691. Nat Biotechnol. 2010. PMID: 20622843 Free PMC article. No abstract available.
Aligning short sequencing reads with Bowtie.
Langmead B. Langmead B. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.7. doi: 10.1002/0471250953.bi1107s32. Curr Protoc Bioinformatics. 2010. PMID: 21154709 Free PMC article.
Fast gapped-read alignment with Bowtie 2.
Langmead B, Salzberg SL. Langmead B, et al. Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923. Nat Methods. 2012. PMID: 22388286 Free PMC article.
HISAT: a fast spliced aligner with low memory requirements.
Kim D, Langmead B, Salzberg SL. Kim D, et al. Among authors: langmead b. Nat Methods. 2015 Apr;12(4):357-60. doi: 10.1038/nmeth.3317. Epub 2015 Mar 9. Nat Methods. 2015. PMID: 25751142 Free PMC article.
Alignment of Next-Generation Sequencing Reads.
Reinert K, Langmead B, Weese D, Evers DJ. Reinert K, et al. Among authors: langmead b. Annu Rev Genomics Hum Genet. 2015;16:133-51. doi: 10.1146/annurev-genom-090413-025358. Epub 2015 May 4. Annu Rev Genomics Hum Genet. 2015. PMID: 25939052 Review.
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