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AliView: a fast and lightweight alignment viewer and editor for large datasets.
Larsson A. Larsson A. Bioinformatics. 2014 Nov 15;30(22):3276-8. doi: 10.1093/bioinformatics/btu531. Epub 2014 Aug 5. Bioinformatics. 2014. PMID: 25095880 Free PMC article.
Downloads and help are available at http://ormbunkar.se/aliview CONTACT: anders.larsson@ebc.uu.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
Downloads and help are available at http://ormbunkar.se/aliview CONTACT: anders.larsson@ebc.uu.se SUPPLEMENTARY INFORMATION: Suppleme …
The evolutionary history of ferns inferred from 25 low-copy nuclear genes.
Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN Jr, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, Chen L, Wei X, Sun X, Korall P, Stevenson DW, Graham SW, Wong GK, Pryer KM. Rothfels CJ, et al. Among authors: larsson a. Am J Bot. 2015 Jul;102(7):1089-107. doi: 10.3732/ajb.1500089. Epub 2015 Jul 16. Am J Bot. 2015. PMID: 26199366
.• METHODS: Here we take a curated phylogenomics approach to infer the first broad fern phylogeny from multiple nuclear loci, by combining broad taxon sampling (73 ferns and 12 outgroup species) with focused character sampling (25 loci comprising 35877 bp), along with rigo …
.• METHODS: Here we take a curated phylogenomics approach to infer the first broad fern phylogeny from multiple nuclear loci, by comb …
Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance.
Stevenson SR, Kamisugi Y, Trinh CH, Schmutz J, Jenkins JW, Grimwood J, Muchero W, Tuskan GA, Rensing SA, Lang D, Reski R, Melkonian M, Rothfels CJ, Li FW, Larsson A, Wong GK, Edwards TA, Cuming AC. Stevenson SR, et al. Among authors: larsson a. Plant Cell. 2016 Jun;28(6):1310-27. doi: 10.1105/tpc.16.00091. Epub 2016 May 18. Plant Cell. 2016. PMID: 27194706 Free PMC article.
We identified ABA nonresponsive mutants in the model bryophyte Physcomitrella patens and genotyped a segregating population to map and identify the ABA NON-RESPONSIVE (ANR) gene encoding a modular protein kinase comprising an N-terminal PAS domain, a central …
We identified ABA nonresponsive mutants in the model bryophyte Physcomitrella patens and genotyped a segregating population to map an …
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA. Lang D, et al. Among authors: larsson a. Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801. Plant J. 2018. PMID: 29237241
In order to enable analyses of genome structure and evolution we generated a chromosome-scale genome assembly using genetic linkage as well as (end) sequencing of long DNA fragments. ...However, the chromosomes are mono-centric with peaks of a class of Copia element …
In order to enable analyses of genome structure and evolution we generated a chromosome-scale genome assembly using genetic linkage a …
Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants.
Jia Q, Li G, Köllner TG, Fu J, Chen X, Xiong W, Crandall-Stotler BJ, Bowman JL, Weston DJ, Zhang Y, Chen L, Xie Y, Li FW, Rothfels CJ, Larsson A, Graham SW, Stevenson DW, Wong GK, Gershenzon J, Chen F. Jia Q, et al. Among authors: larsson a. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12328-12333. doi: 10.1073/pnas.1607973113. Epub 2016 Oct 10. Proc Natl Acad Sci U S A. 2016. PMID: 27791023 Free PMC article.
Directed searching for MTPSL genes in the sequenced genomes of a wide range of seed plants confirmed their general absence in this group. ...Two of the four groups contain a canonical aspartate-rich "DDxxD" motif. The third group has a "DDxxxD" motif, and the …
Directed searching for MTPSL genes in the sequenced genomes of a wide range of seed plants confirmed their general absence in this gr …
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns.
Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, Thomas P, Carpenter E, Zhang Y, Tian Z, Chen L, Yan Z, Zhu Y, Sun X, Wang J, Stevenson DW, Crandall-Stotler BJ, Shaw AJ, Deyholos MK, Soltis DE, Graham SW, Windham MD, Langdale JA, Wong GK, Mathews S, Pryer KM. Li FW, et al. Among authors: larsson a. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6672-7. doi: 10.1073/pnas.1319929111. Epub 2014 Apr 14. Proc Natl Acad Sci U S A. 2014. PMID: 24733898 Free PMC article.
Their ability to thrive under low-light conditions has been linked to the evolution of a novel chimeric photoreceptor--neochrome--that fuses red-sensing phytochrome and blue-sensing phototropin modules into a single gene, thereby optimizing phototropic responses. .. …
Their ability to thrive under low-light conditions has been linked to the evolution of a novel chimeric photoreceptor--neochrome--tha …
Overcoming deep roots, fast rates, and short internodes to resolve the ancient rapid radiation of eupolypod II ferns.
Rothfels CJ, Larsson A, Kuo LY, Korall P, Chiou WL, Pryer KM. Rothfels CJ, et al. Among authors: larsson a. Syst Biol. 2012 May;61(3):490-509. doi: 10.1093/sysbio/sys001. Epub 2012 Jan 4. Syst Biol. 2012. PMID: 22223449
Backbone relationships within the large eupolypod II clade, which includes nearly a third of extant fern species, have resisted elucidation by both molecular and morphological data. ...To resolve the eupolypod II phylogeny, with a particular emphasis on the backbone …
Backbone relationships within the large eupolypod II clade, which includes nearly a third of extant fern species, have resisted eluci …
Global burden of 87 risk factors in 204 countries and territories, 1990-2019: a systematic analysis for the Global Burden of Disease Study 2019.
GBD 2019 Risk Factors Collaborators. GBD 2019 Risk Factors Collaborators. Lancet. 2020 Oct 17;396(10258):1223-1249. doi: 10.1016/S0140-6736(20)30752-2. Lancet. 2020. PMID: 33069327 Free PMC article.
Global burden of 369 diseases and injuries in 204 countries and territories, 1990-2019: a systematic analysis for the Global Burden of Disease Study 2019.
GBD 2019 Diseases and Injuries Collaborators. GBD 2019 Diseases and Injuries Collaborators. Lancet. 2020 Oct 17;396(10258):1204-1222. doi: 10.1016/S0140-6736(20)30925-9. Lancet. 2020. PMID: 33069326 Free PMC article.
Global age-sex-specific fertility, mortality, healthy life expectancy (HALE), and population estimates in 204 countries and territories, 1950-2019: a comprehensive demographic analysis for the Global Burden of Disease Study 2019.
GBD 2019 Demographics Collaborators. GBD 2019 Demographics Collaborators. Lancet. 2020 Oct 17;396(10258):1160-1203. doi: 10.1016/S0140-6736(20)30977-6. Lancet. 2020. PMID: 33069325 Free PMC article.
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