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Automatic assessment of alignment quality.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Nucleic Acids Res. 2005 Dec 16;33(22):7120-8. doi: 10.1093/nar/gki1020. Print 2005. Nucleic Acids Res. 2005. PMID: 16361270 Free PMC article.
Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.
Roy R, Winteringham LN, Lassmann T, Forrest ARR. Roy R, et al. Among authors: lassmann t. Mol Cancer Ther. 2019 Dec;18(12):2480-2489. doi: 10.1158/1535-7163.MCT-19-0273. Epub 2019 Aug 29. Mol Cancer Ther. 2019. PMID: 31467181
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.
Ha TJ, Zhang PGY, Robert R, Yeung J, Swanson DJ, Mathelier A, Wasserman WW, Im S, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium, Carninci P, Hayashizaki Y, Forrest ARR, Goldowitz D. Ha TJ, et al. Among authors: lassmann t. BMC Genomics. 2019 Sep 18;20(1):718. doi: 10.1186/s12864-019-6063-9. BMC Genomics. 2019. PMID: 31533632 Free PMC article.
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.
Denisenko E, Guo BB, Jones M, Hou R, de Kock L, Lassmann T, Poppe D, Clément O, Simmons RK, Lister R, Forrest ARR. Denisenko E, et al. Among authors: lassmann t. Genome Biol. 2020 Jun 2;21(1):130. doi: 10.1186/s13059-020-02048-6. Genome Biol. 2020. PMID: 32487174 Free PMC article.
Bilateral murine tumor models for characterizing the response to immune checkpoint blockade.
Zemek RM, Fear VS, Forbes C, de Jong E, Casey TH, Boon L, Lassmann T, Bosco A, Millward MJ, Nowak AK, Lake RA, Lesterhuis WJ. Zemek RM, et al. Among authors: lassmann t. Nat Protoc. 2020 May;15(5):1628-1648. doi: 10.1038/s41596-020-0299-3. Epub 2020 Apr 1. Nat Protoc. 2020. PMID: 32238953
Reference exome data for Australian Aboriginal populations to support health-based research.
Weeks AL, D'Antoine HA, McKinnon M, Syn G, Bessarab D, Brown N, Tong SYC, Reményi B, Steer A, Gray LA, Inouye M, Carapetis JR, Blackwell JM, Lassmann T. Weeks AL, et al. Among authors: lassmann t. Sci Data. 2020 Apr 29;7(1):129. doi: 10.1038/s41597-020-0463-1. Sci Data. 2020. PMID: 32350262 Free PMC article.
Quality assessment of multiple alignment programs.
Lassmann T, Sonnhammer EL. Lassmann T, et al. FEBS Lett. 2002 Oct 2;529(1):126-30. doi: 10.1016/s0014-5793(02)03189-7. FEBS Lett. 2002. PMID: 12354624
Kalign--an accurate and fast multiple sequence alignment algorithm.
Lassmann T, Sonnhammer EL. Lassmann T, et al. BMC Bioinformatics. 2005 Dec 12;6:298. doi: 10.1186/1471-2105-6-298. BMC Bioinformatics. 2005. PMID: 16343337 Free PMC article.
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W596-9. doi: 10.1093/nar/gkl191. Nucleic Acids Res. 2006. PMID: 16845078 Free PMC article.
Automatic extraction of reliable regions from multiple sequence alignments.
Lassmann T, Sonnhammer EL. Lassmann T, et al. BMC Bioinformatics. 2007 May 24;8 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2105-8-S5-S9. BMC Bioinformatics. 2007. PMID: 17570868 Free PMC article.
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