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Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W596-9. doi: 10.1093/nar/gkl191. Nucleic Acids Res. 2006. PMID: 16845078 Free PMC article.
Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.
Roy R, Winteringham LN, Lassmann T, Forrest ARR. Roy R, et al. Among authors: lassmann t. Mol Cancer Ther. 2019 Dec;18(12):2480-2489. doi: 10.1158/1535-7163.MCT-19-0273. Epub 2019 Aug 29. Mol Cancer Ther. 2019. PMID: 31467181
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.
Ha TJ, Zhang PGY, Robert R, Yeung J, Swanson DJ, Mathelier A, Wasserman WW, Im S, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium, Carninci P, Hayashizaki Y, Forrest ARR, Goldowitz D. Ha TJ, et al. Among authors: lassmann t. BMC Genomics. 2019 Sep 18;20(1):718. doi: 10.1186/s12864-019-6063-9. BMC Genomics. 2019. PMID: 31533632 Free PMC article.
Quality assessment of multiple alignment programs.
Lassmann T, Sonnhammer EL. Lassmann T, et al. FEBS Lett. 2002 Oct 2;529(1):126-30. doi: 10.1016/s0014-5793(02)03189-7. FEBS Lett. 2002. PMID: 12354624
Kalign--an accurate and fast multiple sequence alignment algorithm.
Lassmann T, Sonnhammer EL. Lassmann T, et al. BMC Bioinformatics. 2005 Dec 12;6:298. doi: 10.1186/1471-2105-6-298. BMC Bioinformatics. 2005. PMID: 16343337 Free PMC article.
Automatic assessment of alignment quality.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Nucleic Acids Res. 2005 Dec 16;33(22):7120-8. doi: 10.1093/nar/gki1020. Print 2005. Nucleic Acids Res. 2005. PMID: 16361270 Free PMC article.
Pfam: clans, web tools and services.
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Finn RD, et al. Among authors: lassmann t. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51. doi: 10.1093/nar/gkj149. Nucleic Acids Res. 2006. PMID: 16381856 Free PMC article.
Automatic extraction of reliable regions from multiple sequence alignments.
Lassmann T, Sonnhammer EL. Lassmann T, et al. BMC Bioinformatics. 2007 May 24;8 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2105-8-S5-S9. BMC Bioinformatics. 2007. PMID: 17570868 Free PMC article.
Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features.
Lassmann T, Frings O, Sonnhammer EL. Lassmann T, et al. Nucleic Acids Res. 2009 Feb;37(3):858-65. doi: 10.1093/nar/gkn1006. Epub 2008 Dec 22. Nucleic Acids Res. 2009. PMID: 19103665 Free PMC article.
TagDust--a program to eliminate artifacts from next generation sequencing data.
Lassmann T, Hayashizaki Y, Daub CO. Lassmann T, et al. Bioinformatics. 2009 Nov 1;25(21):2839-40. doi: 10.1093/bioinformatics/btp527. Epub 2009 Sep 7. Bioinformatics. 2009. PMID: 19737799 Free PMC article.
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