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RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Glimma: interactive graphics for gene expression analysis.
Su S, Law CW, Ah-Cann C, Asselin-Labat ML, Blewitt ME, Ritchie ME. Su S, et al. Among authors: law cw. Bioinformatics. 2017 Jul 1;33(13):2050-2052. doi: 10.1093/bioinformatics/btx094. Bioinformatics. 2017. PMID: 28203714 Free PMC article.
Covering all your bases: incorporating intron signal from RNA-seq data.
Lee S, Zhang AY, Su S, Ng AP, Holik AZ, Asselin-Labat ML, Ritchie ME, Law CW. Lee S, et al. Among authors: law cw. NAR Genom Bioinform. 2020 Sep 22;2(3):lqaa073. doi: 10.1093/nargab/lqaa073. eCollection 2020 Sep. NAR Genom Bioinform. 2020. PMID: 33575621 Free PMC article.
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