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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: lee lj. Nat Genet. 2008 Dec;40(12):1413-5. doi: 10.1038/ng.259. Epub 2008 Nov 2. Nat Genet. 2008. PMID: 18978789

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Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ. Fagnani M, et al. Genome Biol. 2007;8(6):R108. doi: 10.1186/gb-2007-8-6-r108. Genome Biol. 2007. PMID: 17565696 Free PMC article.

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RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ. Xiong HY, et al. Among authors: lee lj. Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18. Science. 2015. PMID: 25525159 Free PMC article.

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The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ. Barbosa-Morais NL, et al. Among authors: lee lj. Science. 2012 Dec 21;338(6114):1587-93. doi: 10.1126/science.1230612. Science. 2012. PMID: 23258890

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Deep learning of the tissue-regulated splicing code.

Leung MK, Xiong HY, Lee LJ, Frey BJ. Leung MK, et al. Among authors: lee lj. Bioinformatics. 2014 Jun 15;30(12):i121-9. doi: 10.1093/bioinformatics/btu277. Bioinformatics. 2014. PMID: 24931975 Free PMC article.

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Mutations in STAMBP, encoding a deubiquitinating enzyme, cause microcephaly-capillary malformation syndrome.

McDonell LM, Mirzaa GM, Alcantara D, Schwartzentruber J, Carter MT, Lee LJ, Clericuzio CL, Graham JM Jr, Morris-Rosendahl DJ, Polster T, Acsadi G, Townshend S, Williams S, Halbert A, Isidor B, David A, Smyser CD, Paciorkowski AR, Willing M, Woulfe J, Das S, Beaulieu CL, Marcadier J; FORGE Canada Consortium, Geraghty MT, Frey BJ, Majewski J, Bulman DE, Dobyns WB, O'Driscoll M, Boycott KM. McDonell LM, et al. Among authors: lee lj. Nat Genet. 2013 May;45(5):556-62. doi: 10.1038/ng.2602. Epub 2013 Mar 31. Nat Genet. 2013. PMID: 23542699 Free PMC article.

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Characterization of RNA editome in primary and metastatic lung adenocarcinomas.

Peng L, Lee LJ, Xiong H, Su H, Rao J, Xiao D, He J, Wu K, Liu D. Peng L, et al. Among authors: lee lj. Oncotarget. 2017 Feb 14;8(7):11517-11529. doi: 10.18632/oncotarget.14076. Oncotarget. 2017. PMID: 28009993 Free PMC article.

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Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data.

Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ. Kakaradov B, et al. Among authors: lee lj. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S11. doi: 10.1186/1471-2105-13-S6-S11. BMC Bioinformatics. 2012. PMID: 22537040 Free PMC article.

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Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing.

Lahiry P, Lee LJ, Frey BJ, Rupar CA, Siu VM, Blencowe BJ, Hegele RA. Lahiry P, et al. Among authors: lee lj. PLoS One. 2011;6(9):e25400. doi: 10.1371/journal.pone.0025400. Epub 2011 Sep 27. PLoS One. 2011. PMID: 21980446 Free PMC article.

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Genome-wide analysis of alternative splicing in Caenorhabditis elegans.

Ramani AK, Calarco JA, Pan Q, Mavandadi S, Wang Y, Nelson AC, Lee LJ, Morris Q, Blencowe BJ, Zhen M, Fraser AG. Ramani AK, et al. Among authors: lee lj. Genome Res. 2011 Feb;21(2):342-8. doi: 10.1101/gr.114645.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177968 Free PMC article.

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